Author: tille Date: 2009-03-27 12:32:48 +0000 (Fri, 27 Mar 2009) New Revision: 3215
Added: trunk/packages/velvet/trunk/debian/examples Modified: trunk/packages/velvet/trunk/debian/changelog trunk/packages/velvet/trunk/debian/control trunk/packages/velvet/trunk/debian/install trunk/packages/velvet/trunk/debian/rules Log: New version, use help2man to create man pages, moved third party contrib stuff to /usr/share/doc/velvet/examples to make it more visible for users. Modified: trunk/packages/velvet/trunk/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2009-03-27 05:00:47 UTC (rev 3214) +++ trunk/packages/velvet/trunk/debian/changelog 2009-03-27 12:32:48 UTC (rev 3215) @@ -1,8 +1,15 @@ -velvet (0.7.30-1) UNRELEASED; urgency=low +velvet (0.7.31-1) UNRELEASED; urgency=low * New upstream version + * Standards-Version: 3.8.1 (no changes needed) + * Create manpages using help2man + * Move third-party/layout and third-party/afg_handling to examples + because these scripts are actually not to run velvet but for + the convenience of users - in /urs/share/velvet these scripts + seem to be perfectly hidden and in /usr/share/doc/velvet might + create users attendance - -- Andreas Tille <[email protected]> Fri, 06 Mar 2009 14:50:52 +0100 + -- Andreas Tille <[email protected]> Fri, 27 Mar 2009 13:23:32 +0100 velvet (0.7.24-1) unstable; urgency=low Modified: trunk/packages/velvet/trunk/debian/control =================================================================== --- trunk/packages/velvet/trunk/debian/control 2009-03-27 05:00:47 UTC (rev 3214) +++ trunk/packages/velvet/trunk/debian/control 2009-03-27 12:32:48 UTC (rev 3215) @@ -5,8 +5,8 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: cdbs, debhelper (>= 7), zlib1g-dev, quilt -Standards-Version: 3.8.0 +Build-Depends: cdbs, debhelper (>= 7), zlib1g-dev, quilt, help2man +Standards-Version: 3.8.1 Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/velvet/trunk/ @@ -33,5 +33,14 @@ Architecture: all Depends: ${misc:Depends} Description: Example data for the Velvet sequence assembler + Velvet is a de novo genomic assembler specially designed for short read + sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and + Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near + Cambridge, in the United Kingdom. + . + Velvet currently takes in short read sequences, removes errors then produces + high quality unique contigs. It then uses paired read information, if + available, to retrieve the repeated areas between contigs. + . This package contains the example data distributed in the sources of Velvet, a de novo genomic assembler. Added: trunk/packages/velvet/trunk/debian/examples =================================================================== --- trunk/packages/velvet/trunk/debian/examples (rev 0) +++ trunk/packages/velvet/trunk/debian/examples 2009-03-27 12:32:48 UTC (rev 3215) @@ -0,0 +1,2 @@ +third-party/layout +third-party/afg_handling Modified: trunk/packages/velvet/trunk/debian/install =================================================================== --- trunk/packages/velvet/trunk/debian/install 2009-03-27 05:00:47 UTC (rev 3214) +++ trunk/packages/velvet/trunk/debian/install 2009-03-27 12:32:48 UTC (rev 3215) @@ -1,4 +1,2 @@ velvetg usr/bin velveth usr/bin -third-party/afg_handling/ usr/share/velvet -third-party/layout/ usr/share/velvet Modified: trunk/packages/velvet/trunk/debian/rules =================================================================== --- trunk/packages/velvet/trunk/debian/rules 2009-03-27 05:00:47 UTC (rev 3214) +++ trunk/packages/velvet/trunk/debian/rules 2009-03-27 12:32:48 UTC (rev 3215) @@ -5,4 +5,14 @@ include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/class/makefile.mk +pkg=velvet + DEB_MAKE_BUILD_TARGET = obj velveth velvetg Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include' + +build/velvet:: + mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/ + help2man --no-info --name="simple hashing program" \ + $(CURDIR)/velveth > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth.1 + help2man --no-info --version-option=" " \ + --name="de Bruijn graph construction, error removal and repeat resolution" \ + $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
