Author: smoe-guest
Date: 2009-04-13 16:56:28 +0000 (Mon, 13 Apr 2009)
New Revision: 3287
Added:
trunk/community/talks/200906_bosc/statistics.sh
Modified:
trunk/community/talks/200906_bosc/abstract.tex
Log:
Added script to analyse the number of med-bio packages in various Debian
releases.
Modified: trunk/community/talks/200906_bosc/abstract.tex
===================================================================
--- trunk/community/talks/200906_bosc/abstract.tex 2009-04-12 21:42:13 UTC
(rev 3286)
+++ trunk/community/talks/200906_bosc/abstract.tex 2009-04-13 16:56:28 UTC
(rev 3287)
@@ -13,11 +13,12 @@
\section*{Looking back}
In Bioinformatics we are used to associate technological advantage with
-the advacements with wet-lab techniques that bring us a steadily increased
+the advacements in wet-lab techniques that bring us a steadily increased
influx of more and more novel data to manage and interpret. Over that
we often forget, that this is only possible since the IT sciences have
-evolved even quicker, by keeping pace with the data stream with more
-analyses being applied and even tapping into the combinatorial integration
+evolved even quicker. This allows us to keeping pace with the data stream while
+have more
+analyses being applied and to even tap into the combinatorial integration
of the wet-lab findings and its presentation back to biological researchers.
When the first Bioinformatics Open Source Conferences (BOSC) were held in the
late 90s,
Added: trunk/community/talks/200906_bosc/statistics.sh
===================================================================
--- trunk/community/talks/200906_bosc/statistics.sh
(rev 0)
+++ trunk/community/talks/200906_bosc/statistics.sh 2009-04-13 16:56:28 UTC
(rev 3287)
@@ -0,0 +1,55 @@
+#!/bin/bash
+
+# A quick hack to investigate the distribution
+# of packages in Debian-Med over the past few
+# releases.
+#
+# Steffen Moeller <[email protected]> 2009
+# GPLed
+
+set -e
+
+
+# Set of internal variables caring for the counting
+
+numoldstable=0;
+numstable=0;
+numtesting=0;
+numunstable=0;
+
+
+# Quickly inform about the state of affairs
+
+function stats {
+ cat <<EOSTATS
+
+Here the results of the counting:
+
+ oldstable : $numoldstable
+ stable : $numstable
+ testing : $numtesting
+ unstable : $numunstable
+
+EOSTATS
+}
+
+packages=$( apt-cache show med-bio | grep Recommends | cut -f 2 -d: | tr " ,|"
"\n" | sort -u | grep -v '^$' )
+
+for i in $packages
+do
+ echo "Counting $i"
+
+ dd=$( rmadison $i| grep source | cut -f3 -d\| | tr -d " " )
+ for d in $dd
+ do
+ echo " $d"
+
+ if [ "stable" == "$d" -o "oldstable" == "$d" -o "testing" ==
"$d" -o "unstable" == "$d" ]; then
+ let "num$d += 1"
+ elif [ "etch-m68k" != "$d" ]; then
+ echo "Unprepared for '$d'.\n";
+ fi
+ done
+ stats
+done
+
Property changes on: trunk/community/talks/200906_bosc/statistics.sh
___________________________________________________________________
Added: svn:executable
+ *
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