Author: mok0-guest
Date: 2009-10-05 13:16:55 +0000 (Mon, 05 Oct 2009)
New Revision: 4155
Removed:
trunk/packages/mustang/trunk/debian/patches/02-main.cpp.patch
trunk/packages/mustang/trunk/debian/patches/04-gcc-4.3-exit.patch
Modified:
trunk/packages/mustang/trunk/debian/runtest
trunk/packages/mustang/trunk/debian/test_zf-CCHH-small
Log:
fix runtest script
Deleted: trunk/packages/mustang/trunk/debian/patches/02-main.cpp.patch
===================================================================
--- trunk/packages/mustang/trunk/debian/patches/02-main.cpp.patch
2009-10-05 12:46:54 UTC (rev 4154)
+++ trunk/packages/mustang/trunk/debian/patches/02-main.cpp.patch
2009-10-05 13:16:55 UTC (rev 4155)
@@ -1,27 +0,0 @@
-
---- trunk.orig/src/main.cpp
-+++ trunk/src/main.cpp
-@@ -64,17 +64,17 @@
- if(!meditate)
- {
- cout << "\n" ;
-- cout << "\t\t\t\t\033[0;37;1;41m";
-- cout << " MUSTANG (v.3): A MUltiple STuructural AligNment
alGorithm. \033[0;0m\n" ;
-+ cout << "\033[0;37;1;41m";
-+ cout << " MUSTANG (v.3): A MUltiple STructural AligNment
alGorithm. \033[0;0m\n" ;
- //cout << "\033[0;49m" ;
-- cout << "\t\t\t\t\033[1;33;4;1;46m";
-+ cout << "\033[1;33;4;1;46m";
- cout << "Authors: " ;
- cout << "\033[0;1;37;4;1;46m" ;
-- cout << " A S Konagurthu, J Whisstock, and P J Stuckey, A M
Lesk.\033[0m\n";
-+ cout << " A S Konagurthu, J Whisstock, and P J Stuckey, A M
Lesk. \033[0m\n";
- //cout << "\033[0m" ;
-- cout << "\t\t\t\t\033[0;33;4;1;46m";
-+ cout << "\033[0;33;4;1;46m";
- cout << "(Mis)Coding: " ; cout << "\033[0;37;4;1;46m" ;
-- cout << " A S Konagurthu.
\033[0m\n";
-+ cout << " A S Konagurthu.
\033[0m\n";
- cout << "\033[0m" ;
- cout << "\n\n" ;
- }
Deleted: trunk/packages/mustang/trunk/debian/patches/04-gcc-4.3-exit.patch
===================================================================
--- trunk/packages/mustang/trunk/debian/patches/04-gcc-4.3-exit.patch
2009-10-05 12:46:54 UTC (rev 4154)
+++ trunk/packages/mustang/trunk/debian/patches/04-gcc-4.3-exit.patch
2009-10-05 13:16:55 UTC (rev 4155)
@@ -1,60 +0,0 @@
-
---- trunk.orig/src/ew_2.cpp
-+++ trunk/src/ew_2.cpp
-@@ -35,6 +35,8 @@
- #include <fstream>
- using std::ifstream;
-
-+#include <stdlib.h>
-+
- #include<math.h>
- #include "macros.h"
- #include "globals.h"
---- trunk.orig/src/multiple_superposition.cpp
-+++ trunk/src/multiple_superposition.cpp
-@@ -43,10 +43,11 @@
- using std::flush; using std::endl; using std::ios;
- using std::fixed;
-
--
- #include<iomanip>
- using std::setprecision ; using std::setw ;
-
-+#include<stdlib.h>
-+
- #include "jacobi.h"
- #include "alloc_routines.h"
- #include "de_alloc_routines.h"
---- trunk.orig/src/pdb_ripper_2.cpp
-+++ trunk/src/pdb_ripper_2.cpp
-@@ -35,6 +35,8 @@
- #include <cstring>
- using std::ifstream ;
-
-+#include <stdlib.h>
-+
- #include "macros.h"
- #include "globals.h"
- #include "pdb_ripper.h"
---- trunk.orig/src/progress_align_3.cpp
-+++ trunk/src/progress_align_3.cpp
-@@ -34,6 +34,8 @@
- #include<cmath>
- #include<cstring>
-
-+#include<stdlib.h>
-+
-
- #include "macros.h"
- #include "globals.h"
---- trunk.orig/src/read_structures.cpp
-+++ trunk/src/read_structures.cpp
-@@ -35,6 +35,8 @@
- using std::ifstream ;
- using std::ofstream ;
-
-+#include <stdlib.h>
-+
- #include "macros.h"
- #include "globals.h"
- #include "read_structures.h"
Modified: trunk/packages/mustang/trunk/debian/runtest
===================================================================
--- trunk/packages/mustang/trunk/debian/runtest 2009-10-05 12:46:54 UTC (rev
4154)
+++ trunk/packages/mustang/trunk/debian/runtest 2009-10-05 13:16:55 UTC (rev
4155)
@@ -17,7 +17,8 @@
tmpdir=/tmp/mustang
savedir=$PWD
-mkdir $tmpdir
+rm -rf $tmpdir
+mkdir -p $tmpdir
cd $tmpdir
pdb_fetch $entries
for f in $entries; do gzip -dc $f.pdb.gz > $f.pdb ; done
Modified: trunk/packages/mustang/trunk/debian/test_zf-CCHH-small
===================================================================
--- trunk/packages/mustang/trunk/debian/test_zf-CCHH-small 2009-10-05
12:46:54 UTC (rev 4154)
+++ trunk/packages/mustang/trunk/debian/test_zf-CCHH-small 2009-10-05
13:16:55 UTC (rev 4155)
@@ -16,7 +16,7 @@
## symbols to show that the whitespaces are ignored
##
###############################################################################################
- > /tmp
+ > /tmp/mustang
+1sp1.pdb
+1sp2.pdb
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