Author: tille
Date: 2009-10-14 11:06:32 +0000 (Wed, 14 Oct 2009)
New Revision: 4209
Added:
trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
Modified:
trunk/packages/alien-hunter/trunk/debian/control
trunk/packages/alien-hunter/trunk/debian/copyright
trunk/packages/alien-hunter/trunk/debian/patches/series
trunk/packages/alien-hunter/trunk/debian/rules
Log:
Some lintian issues
Modified: trunk/packages/alien-hunter/trunk/debian/control
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/control 2009-10-14 10:25:32 UTC
(rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/control 2009-10-14 11:06:32 UTC
(rev 4209)
@@ -15,7 +15,7 @@
Depends: ${shlibs:Depends}, ${misc:Depends}, libbytecode-java, libbiojava-java,
libcommons-cli-java, libcommons-collections-java, libcommons-dbcp-java,
libcommons-pool-java
Suggests: bioperl
-Description: Interpolated Variable Order Motifs for identification of
horizontally acquired DNA
+Description: Interpolated Variable Order Motifs to identify horizontally
acquired DNA
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
Modified: trunk/packages/alien-hunter/trunk/debian/copyright
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/copyright 2009-10-14 10:25:32 UTC
(rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/copyright 2009-10-14 11:06:32 UTC
(rev 4209)
@@ -16,7 +16,7 @@
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
- Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
X-Comment: On Debian GNU/Linux you can find these licenses under
/usr/share/common-licenses/GPL
Added:
trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
(rev 0)
+++ trunk/packages/alien-hunter/trunk/debian/patches/10_location_of_perl.patch
2009-10-14 11:06:32 UTC (rev 4209)
@@ -0,0 +1,7 @@
+--- alien_hunter-1.7.orig/alien_hunter.pl
++++ alien_hunter-1.7/alien_hunter.pl
+@@ -1,4 +1,3 @@
+-#!/usr/local/bin/perl
+
+ =head1 NAME
+
Modified: trunk/packages/alien-hunter/trunk/debian/patches/series
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/patches/series 2009-10-14
10:25:32 UTC (rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/patches/series 2009-10-14
11:06:32 UTC (rev 4209)
@@ -1 +1,2 @@
10_fix_classpath.patch
+10_location_of_perl.patch
Modified: trunk/packages/alien-hunter/trunk/debian/rules
===================================================================
--- trunk/packages/alien-hunter/trunk/debian/rules 2009-10-14 10:25:32 UTC
(rev 4208)
+++ trunk/packages/alien-hunter/trunk/debian/rules 2009-10-14 11:06:32 UTC
(rev 4209)
@@ -5,7 +5,7 @@
%:
dh --with quilt $@
-override_dh_install:
+override_dh_auto_build:
CLASSPATH=/usr/share/java/biojava.jar javac -Xlint:deprecation
-Xlint:unchecked *.java
override_dh_auto_clean:
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