Author: plessy Date: 2009-11-20 01:19:08 +0000 (Fri, 20 Nov 2009) New Revision: 4360
Added: trunk/packages/melting/trunk/debian/README.Debian trunk/packages/melting/trunk/debian/upstream-metadata.yaml Removed: trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch Modified: trunk/packages/melting/trunk/debian/changelog trunk/packages/melting/trunk/debian/copyright trunk/packages/melting/trunk/debian/patches/series Log: Uploaded new upstream release with packaging improvements: - Removed debian/patches/tkmelting_call_melting.patch (obsolete) - Added various informations about upstream in debian/upstream-metadata.yaml. - Document how to test melting and tkmelting in debian/README.Debian. Added: trunk/packages/melting/trunk/debian/README.Debian =================================================================== --- trunk/packages/melting/trunk/debian/README.Debian (rev 0) +++ trunk/packages/melting/trunk/debian/README.Debian 2009-11-20 01:19:08 UTC (rev 4360) @@ -0,0 +1,17 @@ +Meting for Debian +───────────────── + +Notes about how this package was tested: + +After building locally on the developper’s computer, the programs melting and +tkmelting were briefly tested before uploading the package to the Debian +archive. + + - melting was ran with the following command line: + melting -SAAAAAAAAAAAAAAA -HA -k0.01 -P0.01 + + - The tkmelting interface was invoked from the Gnome menu, and the meltin + temperature of 0.01 M of the AAAAAAAAAAAAAAA oligonucleotide was calculated + for a 0.01 M salt concentration. + + -- Charles Plessy <[email protected]> Fri, 20 Nov 2009 10:00:28 +0900 Modified: trunk/packages/melting/trunk/debian/changelog =================================================================== --- trunk/packages/melting/trunk/debian/changelog 2009-11-19 19:42:47 UTC (rev 4359) +++ trunk/packages/melting/trunk/debian/changelog 2009-11-20 01:19:08 UTC (rev 4360) @@ -1,13 +1,15 @@ -melting (4.3b-2) UNRELEASED; urgency=low +melting (4.3c-1) unstable; urgency=low - * debian/patches/tkmelting_call_melting.patch: + * New upstream release: calls melting from the PATH with its base name (Closes: #549881). * debian/melting/install: multi.pl and profil.pl available in /usr/share/melting. * debian/copyright refreshed to latest experimentations on the format. * Target generating tkmelting manpage removed from debian/rules. + * Added various informations about upstream in debian/upstream-metadata.yaml. + * Document how to test melting and tkmelting in debian/README.Debian. - -- Charles Plessy <[email protected]> Tue, 06 Oct 2009 18:36:01 +0900 + -- Charles Plessy <[email protected]> Fri, 20 Nov 2009 10:00:28 +0900 melting (4.3b-1) unstable; urgency=low Modified: trunk/packages/melting/trunk/debian/copyright =================================================================== --- trunk/packages/melting/trunk/debian/copyright 2009-11-19 19:42:47 UTC (rev 4359) +++ trunk/packages/melting/trunk/debian/copyright 2009-11-20 01:19:08 UTC (rev 4360) @@ -3,7 +3,7 @@ Name: Melting Contact: Nicolas Le Novère <[email protected]> Marine Dumousseau <[email protected]> -Source: http://www.mirrorservice.org/sites/download.sourceforge.net/pub/sourceforge/m/me/melting/melting4_3.tar.gz +Source: http://qa.debian.org/watch/sf.php/melting/melting4_3c.tar.gz Copyright: 1997–2009, Nicolas Le Novère <[email protected]> 1997–2009, Marine Dumousseau <[email protected]> Modified: trunk/packages/melting/trunk/debian/patches/series =================================================================== --- trunk/packages/melting/trunk/debian/patches/series 2009-11-19 19:42:47 UTC (rev 4359) +++ trunk/packages/melting/trunk/debian/patches/series 2009-11-20 01:19:08 UTC (rev 4360) @@ -1,3 +1,2 @@ tkmelting.patch 20_fix_manpage.patch -tkmelting_call_melting.patch Deleted: trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch =================================================================== --- trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch 2009-11-19 19:42:47 UTC (rev 4359) +++ trunk/packages/melting/trunk/debian/patches/tkmelting_call_melting.patch 2009-11-20 01:19:08 UTC (rev 4360) @@ -1,14 +0,0 @@ -Description: calls melting with its base name from the PATH. -Author: Charles Plessy <[email protected]> -Forwarded: Marine Dumousseau <[email protected]>, Nicolas Le Novère <[email protected]> ---- a/BIN/tkmelting.pl -+++ b/BIN/tkmelting.pl -@@ -537,7 +537,7 @@ sub compute { - # C'est parti - #------------- - -- @results=`./melting4_4-linuxi386 $options -v -q 2>&1`; -+ @results=`melting $options -v -q 2>&1`; - print "@results"; - - #------------------------ Added: trunk/packages/melting/trunk/debian/upstream-metadata.yaml =================================================================== --- trunk/packages/melting/trunk/debian/upstream-metadata.yaml (rev 0) +++ trunk/packages/melting/trunk/debian/upstream-metadata.yaml 2009-11-20 01:19:08 UTC (rev 4360) @@ -0,0 +1,21 @@ +DOI: 10.1093/bioinformatics/17.12.1226 +PubMed: 11751232 +Reference_author: Le Novère, Nicolas +Reference_title: MELTING, computing the melting temperature of nucleic acid duplex +Reference_journal: Bioinformatics +Reference_volume: 17 +Reference_number: 12 +Reference_pages: 1226-1227 +Reference_year: 2001 +Reference_URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/12/1226 +Reference_eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/17/12/1226.pdf +Reference: + author: Le Novère, Nicolas + title: MELTING, computing the melting temperature of nucleic acid duplex + journal: Bioinformatics + volume: 17 + number: 12 + pages: 1226-1227 + year: 2001 + URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/12/1226 + eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/17/12/1226.pdf _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
