Author: tille Date: 2010-06-24 14:18:52 +0000 (Thu, 24 Jun 2010) New Revision: 4910
Added: trunk/packages/velvet/trunk/debian/source/ trunk/packages/velvet/trunk/debian/source/format Modified: trunk/packages/velvet/trunk/debian/changelog trunk/packages/velvet/trunk/debian/control trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch trunk/packages/velvet/trunk/debian/rules Log: New upstream version, source format 3.0 (quilt), switched from simple-patchsys to quilt Modified: trunk/packages/velvet/trunk/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2010-06-24 13:30:55 UTC (rev 4909) +++ trunk/packages/velvet/trunk/debian/changelog 2010-06-24 14:18:52 UTC (rev 4910) @@ -1,3 +1,20 @@ +velvet (1.0.02~nozlibcopy-1) unstable; urgency=low + + * New upstream version + * Source format 3.0 (quilt) + * debian/control: + - Recommends: python (some new scripts in /usr/share/velvet/contrib + are Python scripts) + - Build-Depends: quilt + * debian/rules: + include /usr/share/cdbs/1/rules/patchsys-quilt.mk + (instead of simple-patchsys) + * debian/patches: Switch to quilt + * debian/patches/shuffleSequences_fasta.patch: + Add interpreter to Python script + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 15:41:53 +0200 + velvet (0.7.61~nozlibcopy-1) unstable; urgency=low * New upstream version Modified: trunk/packages/velvet/trunk/debian/control =================================================================== --- trunk/packages/velvet/trunk/debian/control 2010-06-24 13:30:55 UTC (rev 4909) +++ trunk/packages/velvet/trunk/debian/control 2010-06-24 14:18:52 UTC (rev 4910) @@ -5,7 +5,7 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: cdbs, debhelper (>= 7.1), zlib1g-dev, help2man +Build-Depends: cdbs, debhelper (>= 7.1), zlib1g-dev, help2man, quilt Standards-Version: 3.8.4 Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0 @@ -15,6 +15,7 @@ Architecture: any Multi-Arch: foreign Depends: ${shlibs:Depends}, ${misc:Depends} +Recommends: python Suggests: velvet-example Description: Nucleic acid sequence assembler for very short reads Velvet is a de novo genomic assembler specially designed for short read Modified: trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch =================================================================== --- trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch 2010-06-24 13:30:55 UTC (rev 4909) +++ trunk/packages/velvet/trunk/debian/patches/include_debians_zlib.patch 2010-06-24 14:18:52 UTC (rev 4910) @@ -1,8 +1,8 @@ Description: Use the zlib distributed by Debian, not the one in third-party/zlib-1.2.3/. Author: Charles Plessy <[email protected]> Forwarded: no ---- src/readSet.c.orig 2010-01-25 13:27:24.000000000 +0900 -+++ src/readSet.c 2010-01-25 13:28:00.000000000 +0900 +--- velvet_1.0.02~nozlibcopy.orig/src/readSet.c ++++ velvet_1.0.02~nozlibcopy/src/readSet.c @@ -32,7 +32,7 @@ #if defined(_WIN32) || defined(__WIN32__) || defined(WIN32) #include "../third-party/zlib-1.2.3/Win32/include/zlib.h" Modified: trunk/packages/velvet/trunk/debian/rules =================================================================== --- trunk/packages/velvet/trunk/debian/rules 2010-06-24 13:30:55 UTC (rev 4909) +++ trunk/packages/velvet/trunk/debian/rules 2010-06-24 14:18:52 UTC (rev 4910) @@ -7,7 +7,7 @@ include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/class/makefile.mk -include /usr/share/cdbs/1/rules/simple-patchsys.mk +include /usr/share/cdbs/1/rules/patchsys-quilt.mk clean:: $(RM) zlib Added: trunk/packages/velvet/trunk/debian/source/format =================================================================== --- trunk/packages/velvet/trunk/debian/source/format (rev 0) +++ trunk/packages/velvet/trunk/debian/source/format 2010-06-24 14:18:52 UTC (rev 4910) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
