Author: moeller Date: 2010-06-25 16:33:10 +0000 (Fri, 25 Jun 2010) New Revision: 4931
Added: trunk/packages/python-cogent/trunk/debian/patches/ trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch trunk/packages/python-cogent/trunk/debian/patches/series trunk/packages/python-cogent/trunk/source/ trunk/packages/python-cogent/trunk/source/format Removed: trunk/packages/python-cogent/trunk/debian/README.Debian Modified: trunk/packages/python-cogent/trunk/debian/README.source trunk/packages/python-cogent/trunk/debian/changelog trunk/packages/python-cogent/trunk/debian/control Log: Series of updates towards lintian-cleanliness Deleted: trunk/packages/python-cogent/trunk/debian/README.Debian =================================================================== --- trunk/packages/python-cogent/trunk/debian/README.Debian 2010-06-25 16:19:19 UTC (rev 4930) +++ trunk/packages/python-cogent/trunk/debian/README.Debian 2010-06-25 16:33:10 UTC (rev 4931) @@ -1,6 +0,0 @@ -python-pycogent for Debian --------------------------- - -<possible notes regarding this package - if none, delete this file> - - -- root <r...@unknown> Fri, 25 Jun 2010 17:23:58 +0200 Modified: trunk/packages/python-cogent/trunk/debian/README.source =================================================================== --- trunk/packages/python-cogent/trunk/debian/README.source 2010-06-25 16:19:19 UTC (rev 4930) +++ trunk/packages/python-cogent/trunk/debian/README.source 2010-06-25 16:33:10 UTC (rev 4931) @@ -1,9 +1,8 @@ -python-pycogent for Debian +python-cogent for Debian -------------------------- -<this file describes information about the source package, see Debian policy -manual section 4.14. You WILL either need to modify or delete this file> +All source is left intact, except for obvious adjustments to the shebang +line to have it point to /usr/bin/python. - Modified: trunk/packages/python-cogent/trunk/debian/changelog =================================================================== --- trunk/packages/python-cogent/trunk/debian/changelog 2010-06-25 16:19:19 UTC (rev 4930) +++ trunk/packages/python-cogent/trunk/debian/changelog 2010-06-25 16:33:10 UTC (rev 4931) @@ -1,6 +1,6 @@ python-cogent (1.4.1-1) unstable; urgency=low - * Initial release (Closes: #nnnn) + * Initial release (Closes: #587161) -- Sri Girish Srinivasa Murthy <[email protected]> Fri, 25 Jun 2010 17:23:58 +0200 Modified: trunk/packages/python-cogent/trunk/debian/control =================================================================== --- trunk/packages/python-cogent/trunk/debian/control 2010-06-25 16:19:19 UTC (rev 4930) +++ trunk/packages/python-cogent/trunk/debian/control 2010-06-25 16:33:10 UTC (rev 4931) @@ -1,5 +1,5 @@ Source: python-cogent -Section: science +Section: python Priority: extra Maintainer: Sri Girish Srinivasa Murthy <[email protected]> Build-Depends: debhelper (>= 7), cdbs, python, python-central, python-numpy (>= 1.3.0) Added: trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch =================================================================== --- trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch (rev 0) +++ trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch 2010-06-25 16:33:10 UTC (rev 4931) @@ -0,0 +1,67 @@ +Index: python-cogent-1.4.1/cogent/align/dp_calculation.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/align/dp_calculation.py 2010-06-25 18:29:53.790029187 +0200 ++++ python-cogent-1.4.1/cogent/align/dp_calculation.py 2010-06-25 18:29:58.700028486 +0200 +@@ -1,4 +1,4 @@ +-#!/usr/bin/env/python ++#!/usr/bin/python + + from cogent.maths.markov import SiteClassTransitionMatrix + from cogent.recalculation.definition import PositiveParamDefn, \ +Index: python-cogent-1.4.1/cogent/data/molecular_weight.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/data/molecular_weight.py 2010-06-25 18:29:27.460027576 +0200 ++++ python-cogent-1.4.1/cogent/data/molecular_weight.py 2010-06-25 18:29:33.790026526 +0200 +@@ -1,4 +1,4 @@ +-#!/usr/bin/env Python ++#!/usr/bin/python + """Data for molecular weight calculations on proteins and nucleotides.""" + + __author__ = "Rob Knight" +Index: python-cogent-1.4.1/cogent/format/text_tree.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/format/text_tree.py 2010-06-25 18:26:20.110027538 +0200 ++++ python-cogent-1.4.1/cogent/format/text_tree.py 2010-06-25 18:26:30.180027920 +0200 +@@ -1,4 +1,4 @@ +-#!/bin/env python ++#!/usr/bin/python + # file text_tree.py + """Simple base text representation of phylo tree.""" + +Index: python-cogent-1.4.1/cogent/phylo/maximum_likelihood.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/phylo/maximum_likelihood.py 2010-06-25 18:27:03.970027345 +0200 ++++ python-cogent-1.4.1/cogent/phylo/maximum_likelihood.py 2010-06-25 18:27:48.590027730 +0200 +@@ -1,4 +1,4 @@ +-#!/usr/bin/env python' ++#!/usr/bin/python + from tree_space import TreeEvaluator, ancestry2tree + from least_squares import WLS + from math import exp +@@ -68,4 +68,4 @@ + return LogLikelihoodScoredTreeCollection(results) + + +- +\ No newline at end of file ++ +Index: python-cogent-1.4.1/cogent/recalculation/__init__.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/recalculation/__init__.py 2010-06-25 18:28:36.420027396 +0200 ++++ python-cogent-1.4.1/cogent/recalculation/__init__.py 2010-06-25 18:28:42.280028115 +0200 +@@ -1,4 +1,4 @@ +-#!/usr/bin/envthon ++#!/usr/bin/python + __all__ = ['array', 'calculation', 'definition', 'scope', 'setting'] + + __author__ = "Peter Maxwell" +Index: python-cogent-1.4.1/cogent/recalculation/setting.py +=================================================================== +--- python-cogent-1.4.1.orig/cogent/recalculation/setting.py 2010-06-25 18:27:33.160026774 +0200 ++++ python-cogent-1.4.1/cogent/recalculation/setting.py 2010-06-25 18:27:42.830027966 +0200 +@@ -1,4 +1,4 @@ +-#!/usr/bin/env python' ++#!/usr/bin/python + """Instances of these classes are assigned to different parameter/scopes + by a parameter controller""" + Added: trunk/packages/python-cogent/trunk/debian/patches/series =================================================================== --- trunk/packages/python-cogent/trunk/debian/patches/series (rev 0) +++ trunk/packages/python-cogent/trunk/debian/patches/series 2010-06-25 16:33:10 UTC (rev 4931) @@ -0,0 +1 @@ +fix_python_shebang_line.patch Added: trunk/packages/python-cogent/trunk/source/format =================================================================== --- trunk/packages/python-cogent/trunk/source/format (rev 0) +++ trunk/packages/python-cogent/trunk/source/format 2010-06-25 16:33:10 UTC (rev 4931) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
