Author: plessy Date: 2010-07-27 13:20:12 +0000 (Tue, 27 Jul 2010) New Revision: 5067
Added: trunk/packages/staden-io-lib/tags/1.12.4-1/ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright trunk/packages/staden-io-lib/tags/1.12.4-1/debian/libstaden-read1.symbols trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules Removed: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright trunk/packages/staden-io-lib/tags/1.12.4-1/debian/endianness.patch trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules Log: [svn-buildpackage] Tagging staden-io-lib 1.12.4-1 Deleted: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/changelog 2010-05-26 23:09:09 UTC (rev 4847) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog 2010-07-27 13:20:12 UTC (rev 5067) @@ -1,26 +0,0 @@ -staden-io-lib (1.12.2-2) unstable; urgency=low - - * Restrict staden-io-lib to i386 and amd64 platforms, which are the - only ones where it is known to work and be used (debian/control). - * Provide a patch for helping people interested in building this - package on other architectures (debian/endianness.patch). - * Incremented Standards-Version to reflect conformance with Policy 3.8.4 - (debian/control, no changes needed). - - -- Charles Plessy <[email protected]> Sat, 22 May 2010 22:50:35 +0900 - -staden-io-lib (1.12.2-1) unstable; urgency=low - - * New upstream release: extra options in srf2fastq and API changes in - HashTable code. - * Removed the libtool ‘.la’ library (debian/staden-read-dev.install). - * Incremented Standards-Version to reflect conformance with Policy 3.8.3 - (no changes needed). - - -- Charles Plessy <[email protected]> Sun, 17 Jan 2010 22:09:42 +0900 - -staden-io-lib (1.12.1-1) unstable; urgency=low - - * Initial release (Closes: #530753) - - -- Charles Plessy <[email protected]> Mon, 10 Aug 2009 23:32:59 +0900 Copied: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog (from rev 5066, trunk/packages/staden-io-lib/trunk/debian/changelog) =================================================================== --- trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog (rev 0) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/changelog 2010-07-27 13:20:12 UTC (rev 5067) @@ -0,0 +1,39 @@ +staden-io-lib (1.12.4-1) unstable; urgency=low + + * New upstream release, with changes on endianness detection + (closes: #579239). + * Build on all architectures, (debian/control). + * Added library symbols file (debian/libstaden-read1.symbols). + * Incremented Standards-Version to reflect conformance with Policy 3.9.1 + (debian/control, no changes needed). + * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev + (debian/rules, debian/control). + + -- Charles Plessy <[email protected]> Tue, 27 Jul 2010 21:07:57 +0900 + +staden-io-lib (1.12.2-2) unstable; urgency=low + + * Restrict staden-io-lib to i386 and amd64 platforms, which are the + only ones where it is known to work and be used (debian/control). + * Provide a patch for helping people interested in building this + package on other architectures (debian/endianness.patch). + * Incremented Standards-Version to reflect conformance with Policy 3.8.4 + (debian/control, no changes needed). + + -- Charles Plessy <[email protected]> Sat, 22 May 2010 22:50:35 +0900 + +staden-io-lib (1.12.2-1) unstable; urgency=low + + * New upstream release: extra options in srf2fastq and API changes in + HashTable code. + * Removed the libtool ‘.la’ library (debian/staden-read-dev.install). + * Incremented Standards-Version to reflect conformance with Policy 3.8.3 + (no changes needed). + + -- Charles Plessy <[email protected]> Sun, 17 Jan 2010 22:09:42 +0900 + +staden-io-lib (1.12.1-1) unstable; urgency=low + + * Initial release (Closes: #530753) + + -- Charles Plessy <[email protected]> Mon, 10 Aug 2009 23:32:59 +0900 Deleted: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/control 2010-05-26 23:09:09 UTC (rev 4847) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control 2010-07-27 13:20:12 UTC (rev 5067) @@ -1,53 +0,0 @@ -Source: staden-io-lib -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Charles Plessy <[email protected]> -Build-Depends: - debhelper (>= 7), autotools-dev, zlib1g-dev -Standards-Version: 3.8.4 -Homepage: http://staden.sourceforge.net/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/staden-io-lib/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/staden-io-lib/trunk/ - -Package: staden-io-lib-utils -Architecture: i386 amd64 -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: programs for maniuplating DNA sequencing files - The io_lib from the Staden package is a library of file reading and writing - code to provide a general purpose trace file (and Experiment File) reading - interface. It has been compiled and tested on a variety of unix systems, - MacOS X and MS Windows. - . - This package contains the programs that are distributed with the Staden io_lib - for manipulating and converting sequencing data files, and in particular files - to maniuplate short reads generated by second and third generation sequencers - and stored in SRF format. - -Package: libstaden-read-dev -Section: libdevel -Architecture: i386 amd64 -Depends: libstaden-read1 (= ${binary:Version}), ${misc:Depends} -Description: development files for libstaden-read - This package contains the header and development files needed to build - programs and packages using the Staden io_lib. - . - The io_lib from the Staden package is a library of file reading and writing - code to provide a general purpose trace file (and Experiment File) reading - interface. It has been compiled and tested on a variety of unix systems, - MacOS X and MS Windows. - -Package: libstaden-read1 -Section: libs -Architecture: i386 amd64 -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: Staden library for reading and writing DNA sequencing results - This package contains the Staden io_lib, that is renamed in Debian and - Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA - sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. - . - The io_lib from the Staden package is a library of file reading and writing - code to provide a general purpose trace file (and Experiment File) reading - interface. It has been compiled and tested on a variety of unix systems, - MacOS X and MS Windows. Copied: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control (from rev 5066, trunk/packages/staden-io-lib/trunk/debian/control) =================================================================== --- trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control (rev 0) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/control 2010-07-27 13:20:12 UTC (rev 5067) @@ -0,0 +1,55 @@ +Source: staden-io-lib +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Charles Plessy <[email protected]> +Build-Depends: + debhelper (>= 7.0.50~), autotools-dev, zlib1g-dev +Standards-Version: 3.9.1 +Homepage: http://staden.sourceforge.net/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/staden-io-lib/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/staden-io-lib/trunk/ + +Package: staden-io-lib-utils +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: programs for maniuplating DNA sequencing files + The io_lib from the Staden package is a library of file reading and writing + code to provide a general purpose trace file (and Experiment File) reading + interface. It has been compiled and tested on a variety of unix systems, + MacOS X and MS Windows. + . + This package contains the programs that are distributed with the Staden io_lib + for manipulating and converting sequencing data files, and in particular files + to maniuplate short reads generated by second and third generation sequencers + and stored in SRF format. + +Package: libstaden-read-dev +Section: libdevel +Architecture: any +Depends: libstaden-read1 (= ${binary:Version}), ${misc:Depends} +Breaks: staden-io-lib-utils (<< 1.12.4-1~) +Replaces: staden-io-lib-utils (<< 1.12.4-1~) +Description: development files for libstaden-read + This package contains the header and development files needed to build + programs and packages using the Staden io_lib. + . + The io_lib from the Staden package is a library of file reading and writing + code to provide a general purpose trace file (and Experiment File) reading + interface. It has been compiled and tested on a variety of unix systems, + MacOS X and MS Windows. + +Package: libstaden-read1 +Section: libs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Staden library for reading and writing DNA sequencing results + This package contains the Staden io_lib, that is renamed in Debian and + Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA + sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. + . + The io_lib from the Staden package is a library of file reading and writing + code to provide a general purpose trace file (and Experiment File) reading + interface. It has been compiled and tested on a variety of unix systems, + MacOS X and MS Windows. Deleted: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/copyright 2010-05-26 23:09:09 UTC (rev 4847) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright 2010-07-27 13:20:12 UTC (rev 5067) @@ -1,90 +0,0 @@ -Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. - -Name : io-lib -Contact : James Bonfield, Simon Dear, Rodger Staden (io-lib) -Source : http://qa.debian.org/watch/sf.php/staden/io_lib-1.12.2.tar.gz - -Copyright: © 1994 Medical Research Council - © Genome Research Ltd (GRL) -License: GRL or MRC -Upstream-Comment: Newer files and changes are copyright Genome Research Ltd - using the following compatible BSD licence. Disentangling which is which is - somewhat tricky, but it's sufficient to say that work in the CVS tree from - August 2002 will be bound by the GRL licence instead. - -License: GRL - Copyright (c), Genome Research Ltd (GRL). - All rights reserved. - - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: - - * Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - * Redistributions in binary form must reproduce the above - copyright notice, this list of conditions and the following - disclaimer in the documentation and/or other materials - provided with the distribution. - - * Neither the name of the Genome Research Limited nor the - names of its contributors may be used to endorse or promote - products derived from this software without specific prior - written permission. - - THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR - IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED - WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE - ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT, - INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES - (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR - SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) - HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, - STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) - ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED - OF THE POSSIBILITY OF SUCH DAMAGE. - -License: MRC - Copyright (c) Medical Research Council 1994. All rights reserved. - - Permission to use, copy, modify and distribute this software and its - documentation for any purpose is hereby granted without fee, provided that - this copyright and notice appears in all copies. - - This file was written by James Bonfield, Simon Dear, Rodger Staden, - as part of the Staden Package at the MRC Laboratory of Molecular - Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. - - MRC disclaims all warranties with regard to this software. - -Files: io_lib/open_trace_file.c -License: GRL or MRC, and 454 - This file contains some source code owned by 454 Life Sciences Corporation. - -License: 454 - Copyright (c)[2001-2005] 454 Life Sciences Corporation. All Rights Reserved. - - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, - EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF - MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. - - IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER - LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING - FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE. - - Permission to use, copy, modify and distribute this software and its - documentation for any purpose is hereby granted without fee, provided - that this copyright and notice appears in all copies. - - -Files: io_lib/sff.c: -Copyright: © Genome Research Limited (GRL) - © 2001-2005 454 Life Sciences Corporation. -License: GRL and 454 - This file contains some extracts from a file owened by the 454 Life Sciences Corporation. - -Files: debian/* -Copyright: 2008–2009 Charles Plessy <[email protected]> -License: PD - Please treat these files as if they were in your country’s public domain. Copied: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright (from rev 5066, trunk/packages/staden-io-lib/trunk/debian/copyright) =================================================================== --- trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright (rev 0) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/copyright 2010-07-27 13:20:12 UTC (rev 5067) @@ -0,0 +1,90 @@ +Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. + +Name : io-lib +Contact : James Bonfield, Simon Dear, Rodger Staden (io-lib) +Source : http://sourceforge.net/projects/staden/files/ + +Copyright: © 1994 Medical Research Council + © Genome Research Ltd (GRL) +License: GRL or MRC +Upstream-Comment: Newer files and changes are copyright Genome Research Ltd + using the following compatible BSD licence. Disentangling which is which is + somewhat tricky, but it's sufficient to say that work in the CVS tree from + August 2002 will be bound by the GRL licence instead. + +License: GRL + Copyright (c), Genome Research Ltd (GRL). + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions + are met: + + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + * Redistributions in binary form must reproduce the above + copyright notice, this list of conditions and the following + disclaimer in the documentation and/or other materials + provided with the distribution. + + * Neither the name of the Genome Research Limited nor the + names of its contributors may be used to endorse or promote + products derived from this software without specific prior + written permission. + + THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR + IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED + WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT, + INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES + (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) + HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, + STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED + OF THE POSSIBILITY OF SUCH DAMAGE. + +License: MRC + Copyright (c) Medical Research Council 1994. All rights reserved. + + Permission to use, copy, modify and distribute this software and its + documentation for any purpose is hereby granted without fee, provided that + this copyright and notice appears in all copies. + + This file was written by James Bonfield, Simon Dear, Rodger Staden, + as part of the Staden Package at the MRC Laboratory of Molecular + Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. + + MRC disclaims all warranties with regard to this software. + +Files: io_lib/open_trace_file.c +License: GRL or MRC, and 454 + This file contains some source code owned by 454 Life Sciences Corporation. + +License: 454 + Copyright (c)[2001-2005] 454 Life Sciences Corporation. All Rights Reserved. + + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + + IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING + FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE. + + Permission to use, copy, modify and distribute this software and its + documentation for any purpose is hereby granted without fee, provided + that this copyright and notice appears in all copies. + + +Files: io_lib/sff.c: +Copyright: © Genome Research Limited (GRL) + © 2001-2005 454 Life Sciences Corporation. +License: GRL and 454 + This file contains some extracts from a file owened by the 454 Life Sciences Corporation. + +Files: debian/* +Copyright: 2008–2009 Charles Plessy <[email protected]> +License: PD + Please treat these files as if they were in your country’s public domain. Deleted: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/endianness.patch =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/endianness.patch 2010-05-26 23:09:09 UTC (rev 4847) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/endianness.patch 2010-07-27 13:20:12 UTC (rev 5067) @@ -1,107 +0,0 @@ -Description: Corrects description of machine endianness. -Bug-Debian: 579239 -Forwarded: https://sourceforge.net/tracker/?func=detail&aid=3005086&group_id=100316&atid=627058 -Author: Bastian Blank <[email protected]> - -diff -Nru staden-io-lib-1.12.2/io_lib/os.h staden-io-lib-1.12.2/io_lib/os.h ---- staden-io-lib-1.12.2/io_lib/os.h 2009-09-15 13:29:23.000000000 +0000 -+++ staden-io-lib-1.12.2/io_lib/os.h 2010-04-27 16:54:18.000000000 +0000 -@@ -189,91 +189,19 @@ - /* - *----------------------------------------------------------------------------- - * Machine endianness. -- * These are overridden at the end when using autoconf, but are here for -- * when being built as part of the Staden Package. - *----------------------------------------------------------------------------- - */ - --/* -- * First guess via autoconf. This is here as endianness can only be computed -- * by autoconf for the machine we're building on. Hence cross-compilations -- * or MacOSX "fat binaries" cannot work via autoconf in this manner. -- * -- * These provide a default for when the machine specific ifdefs below do you -- * catch your system type. -- */ --#ifdef HAVE_CONFIG_H --# if defined(WORDS_BIGENDIAN) --# ifdef SP_LITTLE_ENDIAN --# undef SP_LITTLE_ENDIAN --# endif --# define SP_BIG_ENDIAN --# else --# ifdef SP_BIG_ENDIAN --# undef SP_BIG_ENDIAN --# endif --# define SP_LITTLE_ENDIAN --# endif --#endif -- --/* -- * x86 equivalents -- */ --#if defined(__i386__) || defined(__i386) || defined(__amd64__) || defined(__amd64) --# if defined(SP_BIG_ENDIAN) --# undef SP_BIG_ENDIAN --# endif --# define SP_LITTLE_ENDIAN --#endif -- --/* -- * DEC Alpha -- */ --#if defined(__alpha__) || defined(__alpha) --# if defined(SP_LITTLE_ENDIAN) --# undef SP_LITTLE_ENDIAN --# endif --# define SP_BIG_ENDIAN --#endif -- --/* -- * SUN Sparc -- */ --#if defined(__sparc__) || defined(__sparc) --# if defined(SP_LITTLE_ENDIAN) --# undef SP_LITTLE_ENDIAN --# endif --# define SP_BIG_ENDIAN --#endif -+#include <endian.h> - --/* -- * PowerPC -- */ --#if defined(__ppc__) || defined(__ppc) --# if defined(SP_LITTLE_ENDIAN) --# undef SP_LITTLE_ENDIAN --# endif --# define SP_BIG_ENDIAN --#endif -- --/* Some catch-alls */ --#if defined(__LITTLE_ENDIAN__) || defined(__LITTLEENDIAN__) -+#if __BYTE_ORDER == __LITTLE_ENDIAN - # define SP_LITTLE_ENDIAN --#endif -- --#if defined(__BIG_ENDIAN__) || defined(__BIGENDIAN__) -+#elif __BYTE_ORDER == __BIG_ENDIAN - # define SP_BIG_ENDIAN -+#else -+# error Unknown endianess - #endif - --#if defined(SP_BIG_ENDIAN) && defined(SP_LITTLE_ENDIAN) --# error Both BIG and LITTLE endian defined. Fix os.h and/or Makefile --#endif -- --#if !defined(SP_BIG_ENDIAN) && !defined(SP_LITTLE_ENDIAN) --# error Neither BIG nor LITTLE endian defined. Fix os.h and/or Makefile --#endif -- -- - /* - *----------------------------------------------------------------------------- - * Typedefs for data sizes. Note there's umpteen versions of typedefs here - - Copied: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/libstaden-read1.symbols (from rev 5066, trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols) =================================================================== --- trunk/packages/staden-io-lib/tags/1.12.4-1/debian/libstaden-read1.symbols (rev 0) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/libstaden-read1.symbols 2010-07-27 13:20:12 UTC (rev 5067) @@ -0,0 +1,385 @@ +libstaden-read.so.1 libstaden-read1 #MINVER# + arraycre...@base 1.12.4 + arraydest...@base 1.12.4 + arrayer...@base 1.12.4 + arrayerrorstr...@base 1.12.4 + arrayext...@base 1.12.4 + array...@base 1.12.4 + hashfilecre...@base 1.12.4 + hashfiledest...@base 1.12.4 + hashfileextr...@base 1.12.4 + hashfilefo...@base 1.12.4 + hashfilel...@base 1.12.4 + hashfileo...@base 1.12.4 + hashfilequ...@base 1.12.4 + hashfiles...@base 1.12.4 + hashhs...@base 1.12.4 + hashjenki...@base 1.12.4 + hashjenk...@base 1.12.4 + hashtable...@base 1.12.4 + hashtablecre...@base 1.12.4 + hashtable...@base 1.12.4 + hashtabledest...@base 1.12.4 + hashtabled...@base 1.12.4 + hashtableitercre...@base 1.12.4 + hashtableiterdest...@base 1.12.4 + hashtableitern...@base 1.12.4 + hashtableiterre...@base 1.12.4 + hashtablen...@base 1.12.4 + hashtablerem...@base 1.12.4 + hashtableres...@base 1.12.4 + hashtablesea...@base 1.12.4 + hashtablest...@base 1.12.4 + hash...@base 1.12.4 + abi_reset_data_cou...@base 1.12.4 + abi_set_data_cou...@base 1.12.4 + be_read_in...@base 1.12.4 + be_read_in...@base 1.12.4 + be_read_in...@base 1.12.4 + be_read_in...@base 1.12.4 + be_write_in...@base 1.12.4 + be_write_in...@base 1.12.4 + be_write_in...@base 1.12.4 + be_write_in...@base 1.12.4 + bit_reve...@base 1.12.4 + block_cre...@base 1.12.4 + block_dest...@base 1.12.4 + block_res...@base 1.12.4 + c2f...@base 1.12.4 + calc_bit_leng...@base 1.12.4 + close_f...@base 1.12.4 + codes2code...@base 1.12.4 + compress_ch...@base 1.12.4 + compress_f...@base 1.12.4 + compress_int2...@base 1.12.4 + compress_str2...@base 1.12.4 + compress_...@base 1.12.4 + compressed_file_exi...@base 1.12.4 + conf2...@base 1.12.4 + construct_trace_n...@base 1.12.4 + ctffr...@base 1.12.4 + ctffwr...@base 1.12.4 + decode_sff_common_hea...@base 1.12.4 + decode_sff_read_hea...@base 1.12.4 + decorrela...@base 1.12.4 + decorrelate1...@base 1.12.4 + decorrela...@base 1.12.4 + decorrelate2...@base 1.12.4 + decorrela...@base 1.12.4 + delete_...@base 1.12.4 + determine_trace_t...@base 1.12.4 + dump_lab...@base 1.12.4 + eflt_feature_...@base 1.12.4 + encode_sff_common_hea...@base 1.12.4 + encode_sff_read_hea...@base 1.12.4 + err...@base 1.12.4 + exp2r...@base 1.12.4 + exp_cl...@base 1.12.4 + exp_create_i...@base 1.12.4 + exp_create_ra...@base 1.12.4 + exp_destroy_i...@base 1.12.4 + exp_extract_ra...@base 1.12.4 + exp_fread_i...@base 1.12.4 + exp_get_feature_in...@base 1.12.4 + exp_get_...@base 1.12.4 + exp_get_...@base 1.12.4 + exp_get_...@base 1.12.4 + exp_mfread_i...@base 1.12.4 + exp_print_f...@base 1.12.4 + exp_print_l...@base 1.12.4 + exp_print_mf...@base 1.12.4 + exp_print_ml...@base 1.12.4 + exp_print_...@base 1.12.4 + exp_put_...@base 1.12.4 + exp_put_...@base 1.12.4 + exp_put_...@base 1.12.4 + exp_read_i...@base 1.12.4 + exp_set_en...@base 1.12.4 + expand_8t...@base 1.12.4 + expand_8t...@base 1.12.4 + exp...@base 1.12.4 + exp...@base 1.12.4 + expk...@base 1.12.4 + expo...@base 1.12.4 + exp...@base 1.12.4 + exp...@base 1.12.4 + exp...@base 1.12.4 + expr...@base 1.12.4 + exp...@base 1.12.4 + exp...@base 1.12.4 + exp...@base 1.12.4 + expw...@base 1.12.4 + f2c...@base 1.12.4 + fcompress_f...@base 1.12.4 + fdetermine_trace_t...@base 1.12.4 + file_exi...@base 1.12.4 + file_s...@base 1.12.4 + f...@base 1.12.4 + foll...@base 1.12.4 + fopen_compres...@base 1.12.4 + fread_...@base 1.12.4 + fread_...@base 1.12.4 + fread_...@base 1.12.4 + fread_...@base 1.12.4 + fread_read...@base 1.12.4 + fread_...@base 1.12.4 + fread_...@base 1.12.4 + free_sff_common_hea...@base 1.12.4 + free_sff_read_d...@base 1.12.4 + free_sff_read_hea...@base 1.12.4 + freopen_compres...@base 1.12.4 + fstr...@base 1.12.4 + fwrite_...@base 1.12.4 + fwrite_...@base 1.12.4 + fwrite_...@base 1.12.4 + fwrite_...@base 1.12.4 + fwrite_read...@base 1.12.4 + fwrite_...@base 1.12.4 + fwrite_...@base 1.12.4 + generate_code_...@base 1.12.4 + getabiindexentr...@base 1.12.4 + getabiindexentr...@base 1.12.4 + getabiindexoff...@base 1.12.4 + getabistr...@base 1.12.4 + getabii...@base 1.12.4 + getabii...@base 1.12.4 + getabii...@base 1.12.4 + get_compression_met...@base 1.12.4 + get_read_c...@base 1.12.4 + has...@base 1.12.4 + h...@base 1.12.4 + huffman_codes_dest...@base 1.12.4 + huffman_codeset_dest...@base 1.12.4 + huffman_dec...@base 1.12.4 + huffman_multi_dec...@base 1.12.4 + huffman_multi_enc...@base 1.12.4 + ichebc...@base 1.12.4 + ichebunc...@base 1.12.4 + init_decode_tab...@base 1.12.4 + int_to_fl...@base 1.12.4 + iolib_get_exp_p...@base 1.12.4 + iolib_get_trace_p...@base 1.12.4 + iolib_set_exp_p...@base 1.12.4 + iolib_set_trace_p...@base 1.12.4 + is_direct...@base 1.12.4 + is_f...@base 1.12.4 + is_...@base 1.12.4 + le_read_in...@base 1.12.4 + le_read_in...@base 1.12.4 + le_read_in...@base 1.12.4 + le_read_in...@base 1.12.4 + le_write_in...@base 1.12.4 + le_write_in...@base 1.12.4 + le_write_in...@base 1.12.4 + le_write_in...@base 1.12.4 + log2_d...@base 1.12.4 + memgun...@base 1.12.4 + memg...@base 1.12.4 + mfas...@base 1.12.4 + mfcl...@base 1.12.4 + mfcre...@base 1.12.4 + mfcreate_f...@base 1.12.4 + mfdest...@base 1.12.4 + mfdet...@base 1.12.4 + mf...@base 1.12.4 + mffl...@base 1.12.4 + mfg...@base 1.12.4 + mfg...@base 1.12.4 + mfo...@base 1.12.4 + mfpri...@base 1.12.4 + mfr...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_read...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_...@base 1.12.4 + mfread_...@base 1.12.4 + mfrecre...@base 1.12.4 + mfreo...@base 1.12.4 + mfs...@base 1.12.4 + mft...@base 1.12.4 + mftrunc...@base 1.12.4 + mfwr...@base 1.12.4 + mfwrite_...@base 1.12.4 + mfwrite_...@base 1.12.4 + mfwrite_...@base 1.12.4 + mfwrite_...@base 1.12.4 + mfwrite_read...@base 1.12.4 + mfwrite_...@base 1.12.4 + mfwrite_...@base 1.12.4 + mrew...@base 1.12.4 + mstd...@base 1.12.4 + mst...@base 1.12.4 + mstd...@base 1.12.4 + mung...@base 1.12.4 + myf...@base 1.12.4 + mystr...@base 1.12.4 + new_...@base 1.12.4 + next_sym...@base 1.12.4 + open_exp_f...@base 1.12.4 + open_exp_mf...@base 1.12.4 + open_f...@base 1.12.4 + open_path_f...@base 1.12.4 + open_path_mf...@base 1.12.4 + open_trace_f...@base 1.12.4 + open_trace_mf...@base 1.12.4 + opos2...@base 1.12.4 + pack_trace_suf...@base 1.12.4 + partial_decode_...@base 1.12.4 + pool_al...@base 1.12.4 + pool_cre...@base 1.12.4 + pool_dest...@base 1.12.4 + pool_f...@base 1.12.4 + qsh...@base 1.12.4 + read2...@base 1.12.4 + read2...@base 1.12.4 + read2...@base 1.12.4 + read_...@base 1.12.4 + read_...@base 1.12.4 + read_alloc...@base 1.12.4 + read_...@base 1.12.4 + read_dealloc...@base 1.12.4 + read_...@base 1.12.4 + read_experiment_redir...@base 1.12.4 + read_f...@base 1.12.4 + read_...@base 1.12.4 + read_read...@base 1.12.4 + read_...@base 1.12.4 + read_scf_b...@base 1.12.4 + read_scf_bas...@base 1.12.4 + read_scf_ba...@base 1.12.4 + read_scf_comm...@base 1.12.4 + read_scf_hea...@base 1.12.4 + read_scf_samp...@base 1.12.4 + read_scf_samp...@base 1.12.4 + read_scf_sampl...@base 1.12.4 + read_scf_sampl...@base 1.12.4 + read_scf_sample...@base 1.12.4 + read_scf_sample...@base 1.12.4 + read_secti...@base 1.12.4 + read_sff_common_hea...@base 1.12.4 + read_sff_read_d...@base 1.12.4 + read_sff_read_hea...@base 1.12.4 + read_update_base_positi...@base 1.12.4 + read_update_confidence_val...@base 1.12.4 + recorrela...@base 1.12.4 + recorrela...@base 1.12.4 + recorrela...@base 1.12.4 + remove_extens...@base 1.12.4 + remove_f...@base 1.12.4 + restore_co...@base 1.12.4 + restore_codes_sin...@base 1.12.4 + r...@base 1.12.4 + scf2r...@base 1.12.4 + scf_alloc...@base 1.12.4 + scf_dealloc...@base 1.12.4 + scf_delta_sampl...@base 1.12.4 + scf_delta_sampl...@base 1.12.4 + scf_version_float2...@base 1.12.4 + scf_version_str2fl...@base 1.12.4 + set_compression_met...@base 1.12.4 + set_scf_vers...@base 1.12.4 + shrink_16...@base 1.12.4 + shrink_32...@base 1.12.4 + srf_construct_cont_...@base 1.12.4 + srf_construct_trace_b...@base 1.12.4 + srf_construct_trace_...@base 1.12.4 + srf_cre...@base 1.12.4 + srf_dest...@base 1.12.4 + srf_destroy_cont_...@base 1.12.4 + srf_destroy_trace_b...@base 1.12.4 + srf_destroy_trace_...@base 1.12.4 + srf_find_tr...@base 1.12.4 + srf_index_add_cont_...@base 1.12.4 + srf_index_add_trace_b...@base 1.12.4 + srf_index_add_trace_...@base 1.12.4 + srf_index_cre...@base 1.12.4 + srf_index_dest...@base 1.12.4 + srf_index_st...@base 1.12.4 + srf_index_wr...@base 1.12.4 + srf_next_block_deta...@base 1.12.4 + srf_next_block_t...@base 1.12.4 + srf_next_tr...@base 1.12.4 + srf_next_...@base 1.12.4 + srf_next_ztr_fl...@base 1.12.4 + srf_o...@base 1.12.4 + srf_read_cont_...@base 1.12.4 + srf_read_index_...@base 1.12.4 + srf_read_pstr...@base 1.12.4 + srf_read_trace_b...@base 1.12.4 + srf_read_trace_...@base 1.12.4 + srf_read_uin...@base 1.12.4 + srf_read_uin...@base 1.12.4 + srf_read_...@base 1.12.4 + srf_write_cont_...@base 1.12.4 + srf_write_index_...@base 1.12.4 + srf_write_pstr...@base 1.12.4 + srf_write_pstri...@base 1.12.4 + srf_write_trace_b...@base 1.12.4 + srf_write_trace_...@base 1.12.4 + srf_write_uin...@base 1.12.4 + srf_write_uin...@base 1.12.4 + srf_write_...@base 1.12.4 + sth...@base 1.12.4 + store_by...@base 1.12.4 + store_co...@base 1.12.4 + store_codes_sin...@base 1.12.4 + str2c...@base 1.12.4 + str2o...@base 1.12.4 + str_tolo...@base 1.12.4 + str_toup...@base 1.12.4 + trace_type_int2...@base 1.12.4 + trace_type_str2...@base 1.12.4 + trace_type_...@base 1.12.4 + tsh...@base 1.12.4 + uncompress_ch...@base 1.12.4 + uncompress_...@base 1.12.4 + unfoll...@base 1.12.4 + unlog2_d...@base 1.12.4 + unqsh...@base 1.12.4 + un...@base 1.12.4 + unsth...@base 1.12.4 + untsh...@base 1.12.4 + unxr...@base 1.12.4 + unx...@base 1.12.4 + vf...@base 1.12.4 + write_...@base 1.12.4 + write_...@base 1.12.4 + write_...@base 1.12.4 + write_...@base 1.12.4 + write_read...@base 1.12.4 + write_...@base 1.12.4 + write_scf_b...@base 1.12.4 + write_scf_bas...@base 1.12.4 + write_scf_ba...@base 1.12.4 + write_scf_comm...@base 1.12.4 + write_scf_hea...@base 1.12.4 + write_scf_samp...@base 1.12.4 + write_scf_samp...@base 1.12.4 + write_scf_sampl...@base 1.12.4 + write_scf_sampl...@base 1.12.4 + write_scf_sample...@base 1.12.4 + write_scf_sample...@base 1.12.4 + xcal...@base 1.12.4 + xf...@base 1.12.4 + xmal...@base 1.12.4 + xreal...@base 1.12.4 + xr...@base 1.12.4 + x...@base 1.12.4 + zlib_deh...@base 1.12.4 + zlib_h...@base 1.12.4 + ztr2r...@base 1.12.4 + ztr_add_hc...@base 1.12.4 + ztr_add_t...@base 1.12.4 + ztr_...@base 1.12.4 + ztr_find_chu...@base 1.12.4 + ztr_find_hc...@base 1.12.4 + ztr_find_hcode_ch...@base 1.12.4 + ztr_lookup_mdata_va...@base 1.12.4 + ztr_new_ch...@base 1.12.4 + ztr_process_t...@base 1.12.4 + ztr_read_chunk_...@base 1.12.4 + ztr_read_hea...@base 1.12.4 + ztr_store_hco...@base 1.12.4 Deleted: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/rules 2010-05-26 23:09:09 UTC (rev 4847) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules 2010-07-27 13:20:12 UTC (rev 5067) @@ -1,3 +0,0 @@ -#!/usr/bin/make -f -%: - dh $@ Copied: trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules (from rev 5066, trunk/packages/staden-io-lib/trunk/debian/rules) =================================================================== --- trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules (rev 0) +++ trunk/packages/staden-io-lib/tags/1.12.4-1/debian/rules 2010-07-27 13:20:12 UTC (rev 5067) @@ -0,0 +1,8 @@ +#!/usr/bin/make -f +%: + dh $@ + +override_dh_install: + dh_install + mkdir -p $(CURDIR)/debian/libstaden-read-dev/usr/bin + mv $(CURDIR)/debian/staden-io-lib-utils/usr/bin/io_lib-config $(CURDIR)/debian/libstaden-read-dev/usr/bin _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
