Author: plessy Date: 2010-11-01 10:16:25 +0000 (Mon, 01 Nov 2010) New Revision: 5408
Modified: trunk/packages/maq/trunk/debian/changelog trunk/packages/maq/trunk/debian/control Log: Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools. Modified: trunk/packages/maq/trunk/debian/changelog =================================================================== --- trunk/packages/maq/trunk/debian/changelog 2010-11-01 03:47:59 UTC (rev 5407) +++ trunk/packages/maq/trunk/debian/changelog 2010-11-01 10:16:25 UTC (rev 5408) @@ -1,3 +1,9 @@ +maq (0.7.1-4) UNRELEASED; urgency=low + + * Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools. + + -- Charles Plessy <[email protected]> Mon, 01 Nov 2010 19:10:28 +0900 + maq (0.7.1-3) unstable; urgency=low * Distribute scripts that are not installed by upstream’s Modified: trunk/packages/maq/trunk/debian/control =================================================================== --- trunk/packages/maq/trunk/debian/control 2010-11-01 03:47:59 UTC (rev 5407) +++ trunk/packages/maq/trunk/debian/control 2010-11-01 10:16:25 UTC (rev 5408) @@ -16,34 +16,9 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Description: maps short fixed-length polymorphic DNA sequence reads to reference sequences Maq (short for Mapping and Assembly with Quality) builds mapping assemblies - from short reads generated by the next-generation sequencing machines. It is + from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2. . - With Maq you can: - - Fast align Illumina/SOLiD reads to the reference genome. With the - default options, one million pairs of reads can be mapped to the - human genome in about 10 CPU hours with less than 1G memory. - - Accurately measure the error probability of the alignment of each - individual read. - - Call the consensus genotypes, including homozygous and heterozygous - polymorphisms, with a Phred probabilistic quality assigned to each base. - - Find short indels with paired end reads. - - Accurately find large scale genomic deletions and translocations with - paired end reads. - - Discover potential CNVs by checking read depth. - - Evaluate the accuracy of raw base qualities from sequencers and help - to check the systematic errors. - . - However, Maq can NOT: - - Do de novo assembly. (Maq can only call the consensus by mapping reads - to a known reference.) - - Map shorts reads against themselves. (Maq can only find complete overlap - between reads.) - - Align capillary reads or 454 reads to the reference. (Maq cannot align - reads longer than 63bp.) - . - This package is likely to be useful for users working with genetics - or genomic studies in biology who need to assembly DNA sequences from - fixed-length sequencers. + Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
