Author: moeller
Date: 2010-11-02 22:14:26 +0000 (Tue, 02 Nov 2010)
New Revision: 5409
Added:
trunk/packages/ensembl/ensembl/57/debian/adjust_chmod.sh
Removed:
trunk/packages/ensembl/ensembl/57/debian/adjust_shebang_chmod.sh
Modified:
trunk/packages/ensembl/ensembl/57/debian/rules
Log:
Fixed (hopefully) a bunch of lintian warnings.
Copied: trunk/packages/ensembl/ensembl/57/debian/adjust_chmod.sh (from rev
5408, trunk/packages/ensembl/ensembl/57/debian/adjust_shebang_chmod.sh)
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/adjust_chmod.sh
(rev 0)
+++ trunk/packages/ensembl/ensembl/57/debian/adjust_chmod.sh 2010-11-02
22:14:26 UTC (rev 5409)
@@ -0,0 +1,8 @@
+#!/bin/bash
+
+for i in "$@"
+do
+ if head -n 1 $i | grep -q '^#!'; then
+ chmod 755 "$i"
+ fi
+done
Deleted: trunk/packages/ensembl/ensembl/57/debian/adjust_shebang_chmod.sh
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/adjust_shebang_chmod.sh
2010-11-01 10:16:25 UTC (rev 5408)
+++ trunk/packages/ensembl/ensembl/57/debian/adjust_shebang_chmod.sh
2010-11-02 22:14:26 UTC (rev 5409)
@@ -1,8 +0,0 @@
-#!/bin/bash
-
-for i in "$@"
-do
- if head -n 1 $i | grep -q '^#!'; then
- chmod 755 "$i"
- fi
-done
Modified: trunk/packages/ensembl/ensembl/57/debian/rules
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/rules 2010-11-01 10:16:25 UTC
(rev 5408)
+++ trunk/packages/ensembl/ensembl/57/debian/rules 2010-11-02 22:14:26 UTC
(rev 5409)
@@ -16,34 +16,33 @@
# nothing to be configured
touch configure-stamp
-build: build-arch
- # for compatibility with regular debian/rules files
+build: build-indep-stamp build-arch
+build-arch: ensembl-variation/C_code/calc_genotypes
+ensembl-variation/C_code/calc_genotypes:
+ $(MAKE) -C ensembl-variation/C_code calc_genotypes
build-indep: build-indep-stamp
build-indep-stamp:
# nothing to build for the Perl packages or the database
# well, those bits should already have been fixed in the source tree,
but, who knows...
- find debian -name CVS -a -type d | xargs -r rm -r
- find debian -name "*.pm" -o -name "*.png" -o -name "*.gif" -o -name
README \
+ find . -name CVS -a -type d | xargs -r rm -r
+ find . -name "*.pm" -o -name "*.png" -o -name "*.gif" -o -name README \
-o -name "*.sql" -o -name "*.pdf" -o -name "*.html" | xargs
-r chmod 644
- find debian -name "*.pl" -o -name "*.t" | xargs -r chmod 755
+ find . -name "*.pl" -o -name "*.t" | xargs -r chmod 755
# First round of updates
- find debian -name "*.pl" -o -name "*.sh" -o -name "*.t" | xargs -r
debian/adjust_shebang_line.sh
+ find . -name "*.pl" -o -name "*.sh" -o -name "*.t" | xargs -r
debian/adjust_shebang_line.sh
#d=$(DESTDIR)/usr/share/ensembl
echo "Adjusting path to Perl wherever it may be found" ; \
- egrep -rl "^#!/.*/perl" debian | xargs -r sed -i
'1s%^#!\s*/(usr|localsw)/.*/perl%#!/usr/bin/perl%' ; \
+ egrep -rl "^#!\s*/.*/perl" . | xargs -r sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/perl%#!/usr/bin/perl%' ; \
echo "Adjusting path to Bash wherever it may be found" ; \
- egrep -rl "^#!/.*/bash" debian | xargs -r sed -i
'1s%^#!\s*/(usr|localsw)/.*/bash%#!/bin/bash%' ; \
+ egrep -rl "^#!\s*/.*/bash" . | xargs -r sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/bash%#!/bin/bash%' ; \
# First round of updates
- find debian -name "*.pl" -o -name "*.sh" -o -name "*.t" | xargs -r
debian/adjust_shebang_chmod.sh
+ find . -name "*.pl" -o -name "*.sh" -o -name "*.t" | xargs -r
debian/adjust_chmod.sh
-build-arch: ensembl-variation/C_code/calc_genotypes
-ensembl-variation/C_code/calc_genotypes:
- $(MAKE) -C ensembl-variation/C_code calc_genotypes
install-arch: build-arch
dh_testdir
@@ -54,7 +53,7 @@
echo "Creating directory '$$dd'." ; \
mkdir -p "$$dd" ; \
fi ; \
- mv ensembl-variation/C_code/calc_genotypes $$dd
+ cp ensembl-variation/C_code/calc_genotypes $$dd
install-indep: build-indep install-indep-copying
# copying files that are considered too different from the original
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