Author: tille Date: 2010-11-24 14:59:49 +0000 (Wed, 24 Nov 2010) New Revision: 5486
Added: trunk/packages/velvet/trunk/debian/patches/fix-perl-path.patch trunk/packages/velvet/trunk/debian/patches/series trunk/packages/velvet/trunk/debian/patches/shuffleSequences_fasta.patch Modified: trunk/packages/velvet/trunk/debian/changelog trunk/packages/velvet/trunk/debian/control trunk/packages/velvet/trunk/debian/get-orig-source Log: New upstream source Modified: trunk/packages/velvet/trunk/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2010-11-24 13:35:59 UTC (rev 5485) +++ trunk/packages/velvet/trunk/debian/changelog 2010-11-24 14:59:49 UTC (rev 5486) @@ -1,3 +1,13 @@ +velvet (1.0.15~nozlibcopy-1) unstable; urgency=low + + * New upstream source + * Standards-Version: 3.9.1 (no changes needed) + * debian/get-upstream-source: Remove precompiled *.o files and + .DS_Store files once we are repackaging anyway + * debian/patches/fix-perl-path.patch: Fix Perl path + + -- Andreas Tille <[email protected]> Wed, 24 Nov 2010 15:42:33 +0100 + velvet (1.0.02~nozlibcopy-1) unstable; urgency=low * New upstream version Modified: trunk/packages/velvet/trunk/debian/control =================================================================== --- trunk/packages/velvet/trunk/debian/control 2010-11-24 13:35:59 UTC (rev 5485) +++ trunk/packages/velvet/trunk/debian/control 2010-11-24 14:59:49 UTC (rev 5486) @@ -6,7 +6,7 @@ Uploaders: Charles Plessy <[email protected]>, Andreas Tille <[email protected]> Build-Depends: cdbs, debhelper (>= 7.1), zlib1g-dev, help2man, quilt -Standards-Version: 3.8.4 +Standards-Version: 3.9.1 Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/velvet/trunk/ Modified: trunk/packages/velvet/trunk/debian/get-orig-source =================================================================== --- trunk/packages/velvet/trunk/debian/get-orig-source 2010-11-24 13:35:59 UTC (rev 5485) +++ trunk/packages/velvet/trunk/debian/get-orig-source 2010-11-24 14:59:49 UTC (rev 5486) @@ -15,6 +15,14 @@ mv ../${UPSTREAMDIR}.tgz . tar -xzf ${UPSTREAMDIR}.tgz rm -rf ${UPSTREAMDIR}/third-party + +## Deletue useless binaries once we are changing the original tarball anyway +# delete precompiled object files +# rm -f ${UPSTREAMDIR}/obj/*.o +find ${UPSTREAMDIR} -name "*.o" -exec rm -f \{\} \; +# delete .DS_Store files +find ${UPSTREAMDIR} -name .DS_Store -exec rm -f \{\} \; + mv ${UPSTREAMDIR} ${UPSTREAMDIR}~nozlibcopy GZIP=-9 tar -czf "$PKG"_"$VERSION~nozlibcopy".orig.tar.gz "${UPSTREAMDIR}~nozlibcopy" Added: trunk/packages/velvet/trunk/debian/patches/fix-perl-path.patch =================================================================== --- trunk/packages/velvet/trunk/debian/patches/fix-perl-path.patch (rev 0) +++ trunk/packages/velvet/trunk/debian/patches/fix-perl-path.patch 2010-11-24 14:59:49 UTC (rev 5486) @@ -0,0 +1,11 @@ +Description: s?/usr/local/perl?/usr/perl? +Author: Andreas Tille <[email protected]> +Forwarded: No +--- velvet_1.0.15~nozlibcopy.orig/contrib/select_paired/select_paired.pl ++++ velvet_1.0.15~nozlibcopy/contrib/select_paired/select_paired.pl +@@ -1,4 +1,4 @@ +-#!/usr/local/bin/perl -w ++#!/usr/bin/perl -w + # Konrad Paszkiewicz, University of Exeter UK. + # [email protected] + Added: trunk/packages/velvet/trunk/debian/patches/series =================================================================== --- trunk/packages/velvet/trunk/debian/patches/series (rev 0) +++ trunk/packages/velvet/trunk/debian/patches/series 2010-11-24 14:59:49 UTC (rev 5486) @@ -0,0 +1,3 @@ +include_debians_zlib.patch +shuffleSequences_fasta.patch +fix-perl-path.patch Added: trunk/packages/velvet/trunk/debian/patches/shuffleSequences_fasta.patch =================================================================== --- trunk/packages/velvet/trunk/debian/patches/shuffleSequences_fasta.patch (rev 0) +++ trunk/packages/velvet/trunk/debian/patches/shuffleSequences_fasta.patch 2010-11-24 14:59:49 UTC (rev 5486) @@ -0,0 +1,10 @@ +Description: Scripts need to specify interpreter in the first line +Author: Andreas Tille <[email protected]> +Forwarded: not yet +--- velvet_1.0.02~nozlibcopy.orig/contrib/shuffleSequences_fasta/shuffleSequences_fasta.py ++++ velvet_1.0.02~nozlibcopy/contrib/shuffleSequences_fasta/shuffleSequences_fasta.py +@@ -1,3 +1,4 @@ ++#!/usr/bin/python + import sys + from Bio import SeqIO + def interleave(iter1, iter2) : _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
