Author: tille Date: 2011-02-11 13:54:51 +0000 (Fri, 11 Feb 2011) New Revision: 5950
Added: trunk/packages/abacas/ trunk/packages/abacas/trunk/ trunk/packages/abacas/trunk/debian/ trunk/packages/abacas/trunk/debian/changelog trunk/packages/abacas/trunk/debian/compat trunk/packages/abacas/trunk/debian/control trunk/packages/abacas/trunk/debian/copyright trunk/packages/abacas/trunk/debian/source/ trunk/packages/abacas/trunk/debian/source/format trunk/packages/abacas/trunk/debian/watch Log: Quick shot at abacas packaging. Packaging technical it seems to be a very easy target. It's used in our institute. Anybody willing to complete this task? Added: trunk/packages/abacas/trunk/debian/changelog =================================================================== --- trunk/packages/abacas/trunk/debian/changelog (rev 0) +++ trunk/packages/abacas/trunk/debian/changelog 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1,6 @@ +abacas (1.3.1-1) unstable; urgency=low + + * Initial release (Closes: #????) + PACKAGING NOT FINISHED - FEEL FREE TO TAKE OVER + + -- Andreas Tille <[email protected]> Mon, 11 Feb 2011 12:02:43 +0100 Added: trunk/packages/abacas/trunk/debian/compat =================================================================== --- trunk/packages/abacas/trunk/debian/compat (rev 0) +++ trunk/packages/abacas/trunk/debian/compat 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1 @@ +7 Added: trunk/packages/abacas/trunk/debian/control =================================================================== --- trunk/packages/abacas/trunk/debian/control (rev 0) +++ trunk/packages/abacas/trunk/debian/control 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1,29 @@ +Source: abacas +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 7.1) +Standards-Version: 3.9.1 +Homepage: http://abacas.sourceforge.net/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/abacas/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/abacas/trunk/ + +Package: abacas +Architecture: all +Depends: ${perl:Depends}, ${misc:Depends}, mummer +Description: Algorithm Based Automatic Contiguation of Assembled Sequences + ABACAS is intended to rapidly contiguate (align, order, orientate), + visualize and design primers to close gaps on shotgun assembled contigs + based on a reference sequence. + . + ABACAS uses MUMmer to find alignment positions and identify syntenies + of assembled contigs against the reference. The output is then processed + to generate a pseudomolecule taking overlapping contigs and gaps in to + account. ABACAS generates a comparision file that can be used to + visualize ordered and oriented contigs in ACT. Synteny is represented by + red bars where colour intensity decreases with lower values of percent + identity between comparable blocks. Information on contigs such as the + orientation, percent identity, coverage and overlap with other contigs + can also be visualized by loading the outputted feature file on ACT. Added: trunk/packages/abacas/trunk/debian/copyright =================================================================== --- trunk/packages/abacas/trunk/debian/copyright (rev 0) +++ trunk/packages/abacas/trunk/debian/copyright 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1,29 @@ +Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. + +Name : Abacas +Contact : +Source : http://sourceforge.net/projects/abacas/files/ + +Copyright: © 2008-10 Genome Research Limited. All Rights Reserved. +License: GPL-2+ + + Abacas is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + Velvet is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with Velvet; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +On Debian systems, the complete text of the GNU General Public +License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. + +Files: debian/* +Copyright: © 2011 Andreas Tille <[email protected]> +License: Same as abacas Added: trunk/packages/abacas/trunk/debian/source/format =================================================================== --- trunk/packages/abacas/trunk/debian/source/format (rev 0) +++ trunk/packages/abacas/trunk/debian/source/format 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/abacas/trunk/debian/watch =================================================================== --- trunk/packages/abacas/trunk/debian/watch (rev 0) +++ trunk/packages/abacas/trunk/debian/watch 2011-02-11 13:54:51 UTC (rev 5950) @@ -0,0 +1,2 @@ +version=3 +http://sf.net/abacas/abacas\.([\d\.]+)\.pl _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
