Author: tille Date: 2011-02-17 15:11:10 +0000 (Thu, 17 Feb 2011) New Revision: 6013
Added: trunk/packages/prottest/ trunk/packages/prottest/trunk/ trunk/packages/prottest/trunk/debian/ trunk/packages/prottest/trunk/debian/changelog trunk/packages/prottest/trunk/debian/compat trunk/packages/prottest/trunk/debian/control trunk/packages/prottest/trunk/debian/copyright trunk/packages/prottest/trunk/debian/docs trunk/packages/prottest/trunk/debian/rules trunk/packages/prottest/trunk/debian/source/ trunk/packages/prottest/trunk/debian/source/format trunk/packages/prottest/trunk/debian/watch Log: Inject some packaging code for prottest - does not build a working package! Added: trunk/packages/prottest/trunk/debian/changelog =================================================================== --- trunk/packages/prottest/trunk/debian/changelog (rev 0) +++ trunk/packages/prottest/trunk/debian/changelog 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1,5 @@ +prottest (3.0b-20101222-1) unstable; urgency=low + + * Initial release (Closes: #?????) + + -- Andreas Tille <[email protected]> Wed, 02 Feb 2011 15:45:54 +0100 Added: trunk/packages/prottest/trunk/debian/compat =================================================================== --- trunk/packages/prottest/trunk/debian/compat (rev 0) +++ trunk/packages/prottest/trunk/debian/compat 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1 @@ +7 Added: trunk/packages/prottest/trunk/debian/control =================================================================== --- trunk/packages/prottest/trunk/debian/control (rev 0) +++ trunk/packages/prottest/trunk/debian/control 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1,29 @@ +Source: prottest +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 7.1) +Standards-Version: 3.9.1 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/prottest/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/prottest/trunk/ +Homepage: http://darwin.uvigo.es/software/prottest.html + +Package: prottest +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Selection of best-fit models of protein evolution + PROTTEST (ModelTest's relative) is a program for selecting the model of + protein evolution that best fits a given set of sequences (alignment). + This java program is based on the Phyml program (for maximum likelihood + calculations and optimization of parameters) and uses the PAL library as + well. Models included are empirical substitution matrices (such as WAG, + LG, mtREV, Dayhoff, DCMut, JTT, VT, Blosum62, CpREV, RtREV, MtMam, + MtArt, HIVb, and HIVw) that indicate relative rates of amino acid + replacement, and specific improvements (+I:invariable sites, +G: rate + heterogeneity among sites, +F: observed amino acid frequencies) to + account for the evolutionary constraints impossed by conservation of + protein structure and function. ProtTest uses the Akaike Information + Criterion (AIC) and other statistics (AICc and BIC) to find which of the + candidate models best fits the data at hand. Added: trunk/packages/prottest/trunk/debian/copyright =================================================================== --- trunk/packages/prottest/trunk/debian/copyright (rev 0) +++ trunk/packages/prottest/trunk/debian/copyright 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1,16 @@ +Format: http://dep.debian.net/deps/dep5/ +Upstream-Name: Prottest +Upstream-Contact: David Posada <[email protected]> +Source: http://cs.njit.edu/usman/probalign/ + +Files: * +Copyright: © 2008-2011 David Posada <[email protected]> +License: GPL + +++ -> siehe THIRDPARTYLICENSES file + + +Files: debian/* +Copyright: © 2011 Andreas Tille <[email protected]> +License: The Debian packaging is licensed under the same terms + as probalign. Added: trunk/packages/prottest/trunk/debian/docs =================================================================== --- trunk/packages/prottest/trunk/debian/docs (rev 0) +++ trunk/packages/prottest/trunk/debian/docs 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1 @@ +README Added: trunk/packages/prottest/trunk/debian/rules =================================================================== --- trunk/packages/prottest/trunk/debian/rules (rev 0) +++ trunk/packages/prottest/trunk/debian/rules 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1,10 @@ +#!/usr/bin/make -f +# debian/rules for prottest +# Andreas Tille <[email protected]> +# GPL + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ Property changes on: trunk/packages/prottest/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/prottest/trunk/debian/source/format =================================================================== --- trunk/packages/prottest/trunk/debian/source/format (rev 0) +++ trunk/packages/prottest/trunk/debian/source/format 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/prottest/trunk/debian/watch =================================================================== --- trunk/packages/prottest/trunk/debian/watch (rev 0) +++ trunk/packages/prottest/trunk/debian/watch 2011-02-17 15:11:10 UTC (rev 6013) @@ -0,0 +1,2 @@ +version=3 +https://bitbucket.org/diegodl/prottest3/downloads/prottest-(.+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
