Author: osallou-guest Date: 2011-03-18 10:31:47 +0000 (Fri, 18 Mar 2011) New Revision: 6286
Added: trunk/packages/squizz/ trunk/packages/squizz/trunk/ trunk/packages/squizz/trunk/debian/ trunk/packages/squizz/trunk/debian/README.Debian trunk/packages/squizz/trunk/debian/README.source trunk/packages/squizz/trunk/debian/changelog trunk/packages/squizz/trunk/debian/compat trunk/packages/squizz/trunk/debian/control trunk/packages/squizz/trunk/debian/copyright trunk/packages/squizz/trunk/debian/docs trunk/packages/squizz/trunk/debian/rules trunk/packages/squizz/trunk/debian/source/ trunk/packages/squizz/trunk/debian/source/format trunk/packages/squizz/trunk/debian/squizz.1 trunk/packages/squizz/trunk/debian/squizz.manpages trunk/packages/squizz/trunk/debian/watch Log: add debian data Property changes on: trunk/packages/squizz/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/squizz/trunk/debian/README.Debian =================================================================== --- trunk/packages/squizz/trunk/debian/README.Debian (rev 0) +++ trunk/packages/squizz/trunk/debian/README.Debian 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,6 @@ +squizz for Debian +----------------- + +<possible notes regarding this package - if none, delete this file> + + -- Olivier Sallou <[email protected]> Fri, 18 Mar 2011 11:03:46 +0100 Added: trunk/packages/squizz/trunk/debian/README.source =================================================================== --- trunk/packages/squizz/trunk/debian/README.source (rev 0) +++ trunk/packages/squizz/trunk/debian/README.source 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,9 @@ +squizz for Debian +----------------- + +<this file describes information about the source package, see Debian policy +manual section 4.14. You WILL either need to modify or delete this file> + + + + Added: trunk/packages/squizz/trunk/debian/changelog =================================================================== --- trunk/packages/squizz/trunk/debian/changelog (rev 0) +++ trunk/packages/squizz/trunk/debian/changelog 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,5 @@ +squizz (0.99a-1) unstable; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- Olivier Sallou <[email protected]> Fri, 18 Mar 2011 11:03:46 +0100 Added: trunk/packages/squizz/trunk/debian/compat =================================================================== --- trunk/packages/squizz/trunk/debian/compat (rev 0) +++ trunk/packages/squizz/trunk/debian/compat 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1 @@ +7 Added: trunk/packages/squizz/trunk/debian/control =================================================================== --- trunk/packages/squizz/trunk/debian/control (rev 0) +++ trunk/packages/squizz/trunk/debian/control 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,22 @@ +Source: squizz +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]> +DM-Upload-Allowed: yes +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/squizz/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/squizz/trunk/?rev=0&sc=0 +Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ + +Package: squizz +Architecture: any +Build-Depends: debhelper (>= 7), gcc, automake +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Sequence/alignment converter + Squizz is a sequence/alignment format checker, but it has some + conversion capabilities too. + Most common sequence and alignment formats are supported : + - EMBL, FASTA, GCG, GDE, GENBANK, IG, NBRF, PIR (codata), RAW, and + SWISSPROT. + - CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and + STOCKHOLM. Added: trunk/packages/squizz/trunk/debian/copyright =================================================================== --- trunk/packages/squizz/trunk/debian/copyright (rev 0) +++ trunk/packages/squizz/trunk/debian/copyright 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,31 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: squizz +Source: <url://example.com> + +Files: * +Copyright: 2011 Nicolas Joly<[email protected]> +License: GPL-2.0+ + +Files: debian/* +Copyright: 2011 Olivier Sallou <[email protected]> +License: GPL-2.0+ + +License: GPL-2.0+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. Added: trunk/packages/squizz/trunk/debian/docs =================================================================== --- trunk/packages/squizz/trunk/debian/docs (rev 0) +++ trunk/packages/squizz/trunk/debian/docs 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,3 @@ +NEWS +README +TODO Added: trunk/packages/squizz/trunk/debian/rules =================================================================== --- trunk/packages/squizz/trunk/debian/rules (rev 0) +++ trunk/packages/squizz/trunk/debian/rules 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,13 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ Property changes on: trunk/packages/squizz/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/squizz/trunk/debian/source/format =================================================================== --- trunk/packages/squizz/trunk/debian/source/format (rev 0) +++ trunk/packages/squizz/trunk/debian/source/format 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/squizz/trunk/debian/squizz.1 =================================================================== --- trunk/packages/squizz/trunk/debian/squizz.1 (rev 0) +++ trunk/packages/squizz/trunk/debian/squizz.1 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,42 @@ +.TH SQUIZZ SECTION "March 18, 2011" +.SH NAME +squizz \- Sequence and alignment checker/converter +.SH SYNOPSIS +.B squizz +.RI [ options ] " file" +.SH DESCRIPTION +This manual page documents briefly the +.B squizz +commands. +.PP +\fBsquizz\fP is a program that checks the format of many bioinformatics format and can converter from one format to the other. +.SH OPTIONS +.TP +.B \-h +Show summary of options. +.TP +.B \-A +Detect alignment formats only. +.TP +.B \-S +Detect sequence formats only +.TP +.B \-c <fmt> +Convert into format <fmt>. +.TP +.B \-f <fmt> +Assume input format <fmt>. +.TP +.B \-l +List all supported formats. +.TP +.B \-n +Count and report entries number. +.TP +.B \-s +Disable strict format checks. +.SH AUTHOR +squizz was written by Nicolas Joly. +.PP +This manual page was written by Olivier Sallou <[email protected]>, +for the Debian project (and may be used by others). Added: trunk/packages/squizz/trunk/debian/squizz.manpages =================================================================== --- trunk/packages/squizz/trunk/debian/squizz.manpages (rev 0) +++ trunk/packages/squizz/trunk/debian/squizz.manpages 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1 @@ +debian/squizz.1 Added: trunk/packages/squizz/trunk/debian/watch =================================================================== --- trunk/packages/squizz/trunk/debian/watch (rev 0) +++ trunk/packages/squizz/trunk/debian/watch 2011-03-18 10:31:47 UTC (rev 6286) @@ -0,0 +1,24 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 + +# Uncomment to examine a Webpage +# <Webpage URL> <string match> +#http://www.example.com/downloads.php squizz-(.*)\.tar\.gz + +# Uncomment to examine a Webserver directory +#http://www.example.com/pub/squizz-(.*)\.tar\.gz + +# Uncommment to examine a FTP server +#ftp://ftp.example.com/pub/squizz-(.*)\.tar\.gz debian uupdate +ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/squizz-(.*)\.tar\.gz debian uupdate + +# Uncomment to find new files on sourceforge, for devscripts >= 2.9 +# http://sf.net/squizz/squizz-(.*)\.tar\.gz + +# Uncomment to find new files on GooglePages +# http://example.googlepages.com/foo.html squizz-(.*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
