Author: philipp Date: 2011-04-10 17:58:26 +0000 (Sun, 10 Apr 2011) New Revision: 6511
Added: trunk/packages/python-biopython/tags/1.56-1/ trunk/packages/python-biopython/tags/1.56-1/debian/changelog trunk/packages/python-biopython/tags/1.56-1/debian/control Removed: trunk/packages/python-biopython/tags/1.56-1/debian/changelog trunk/packages/python-biopython/tags/1.56-1/debian/control Log: [svn-buildpackage] Tagging python-biopython 1.56-1 Deleted: trunk/packages/python-biopython/tags/1.56-1/debian/changelog =================================================================== --- trunk/packages/python-biopython/trunk/debian/changelog 2011-04-10 17:10:54 UTC (rev 6509) +++ trunk/packages/python-biopython/tags/1.56-1/debian/changelog 2011-04-10 17:58:26 UTC (rev 6511) @@ -1,223 +0,0 @@ -python-biopython (1.54-1) unstable; urgency=low - - * New upstream release - - -- Philipp Benner <phil...@debian.org> Fri, 28 May 2010 00:06:43 +0200 - -python-biopython (1.53-1) unstable; urgency=low - - * New upstream release. - - -- Philipp Benner <phil...@debian.org> Mon, 21 Dec 2009 15:30:37 +0000 - -python-biopython (1.52-1) unstable; urgency=low - - * New upstream release. - - -- Philipp Benner <phil...@debian.org> Wed, 30 Sep 2009 10:16:03 +0000 - -python-biopython (1.51final-2) unstable; urgency=low - - * Merged patch from ubuntu to make the package ready for - python2.6 (Closes: #543236). - - -- Philipp Benner <phil...@debian.org> Mon, 24 Aug 2009 09:29:27 +0000 - -python-biopython (1.51final-1) unstable; urgency=low - - * New upstream release - * debian/control: suggesting muscle, clustalw, mafft, emboss, and - blast2 for installation - - -- Philipp Benner <phil...@debian.org> Wed, 19 Aug 2009 10:41:19 +0000 - -python-biopython (1.51b-2) unstable; urgency=low - - * Dropped python-biopython-martel. - * Dropped dependency on python-egenix-mxtexttools. - * Removed DM-Upload-Allowed: yes. - - -- Philipp Benner <phil...@debian.org> Tue, 11 Aug 2009 19:47:52 +0000 - -python-biopython (1.51b-1) unstable; urgency=low - - * New upstream release - * debian/control: - - moved python-martel back to section python (python packages do not - use section oldlibs) - * debian/patches/02-fix-wise-test.patch - - removed (merged with upstream) - * debian/control: - - Changed the description of python-biopython-sql according to Peter Cock's - suggestions. - [Charles Plessy] - - -- Philipp Benner <pben...@uni-osnabrueck.de> Sat, 27 Jun 2009 15:14:52 +0000 - -python-biopython (1.49-1) unstable; urgency=low - - * New upstream release. - - uses NumPy rather than its precursor Numeric (Closes: #478457) - - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and - Bio.IntelliGenetics are deprecated. - - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete - and will be deprecated in a future release. - - Bio.Fasta is also considered to be obsolete and will eventually be - deprecated. - * debian/control: - - added myself as Uploader. - - depends on python-numpy instead of python-numeric-ext. - - moved python-martel to oldlibs section, priority extra as it is - deprecated, and indicate this in the description. - - build-depend on python-mysqldb and wise for the tests after building. - * Use Debhelper 7 (debian/co{ntrol,mpat}). - * debian/copyright: added myself to the Hall of Fame and updated to latest - draft of the machine-readable format. - * debian/watch: makes beta versions lower by prepending a tilde between - numbers and letters (1.49b -> 1.49~b). - * mmCIF support enabled: - - debian/patches/01-enable-mmCIF.patch: as the name indicates ;) - - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make. - - debian/control: build-depends on quilt. - * debian/python-biopython-doc.doc-base: corrected index name that was changed - upstream. - * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's - version of Wise. - * debian/rules: perform tests after build. - - -- Charles Plessy <ple...@debian.org> Fri, 23 Jan 2009 22:19:50 +0900 - -python-biopython (1.47-1) unstable; urgency=low - - * New upstream release - * Standards version 3.8.0 - - -- Philipp Benner <pben...@uni-osnabrueck.de> Sun, 03 Aug 2008 14:29:33 +0200 - -python-biopython (1.45-3) unstable; urgency=low - - * Removed dependency on python-numeric-ext since it is already in - the recommends field - - -- Philipp Benner <pben...@uni-osnabrueck.de> Sun, 01 Jun 2008 10:34:48 +0200 - -python-biopython (1.45-2) unstable; urgency=low - - * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package) - - -- Morten Kjeldgaard <m...@bioxray.au.dk> Wed, 23 Apr 2008 00:01:16 +0200 - -python-biopython (1.45-1) unstable; urgency=low - - * New upstream release. - * Added doc-base. - - -- Philipp Benner <pben...@uni-osnabrueck.de> Sat, 29 Mar 2008 12:20:41 +0100 - -python-biopython (1.44-3) unstable; urgency=low - - * New maintainer e-mail address. - * debian/control: Added DM-Upload-Allowed: yes. - - -- Philipp Benner <pben...@uni-osnabrueck.de> Mon, 14 Jan 2008 18:35:18 +0100 - -python-biopython (1.44-2) unstable; urgency=low - - * Moved suggested package python-numeric-ext to recommends field - (Closes: #452379). - * Moved wise from recommends to suggests field. - * Removed package tags from debian/control. - * Added homepage field to debian/control. - * Changed maintainer to Debian-Med Packaging Team. - * Removed .DS_Store.gz file from doc package. - - -- Philipp Benner <m...@philipp-benner.de> Thu, 22 Nov 2007 13:35:00 +0100 - -python-biopython (1.44-1) unstable; urgency=low - - * New upstream release. - * Machine interpretable copyright file. - - -- Philipp Benner <m...@philipp-benner.de> Fri, 16 Nov 2007 16:49:11 +0100 - -python-biopython (1.43-2) unstable; urgency=low - - * Rebuild for python-2.5 support (Closes: #424025). - - -- Philipp Benner <m...@philipp-benner.de> Thu, 14 Jun 2007 21:40:18 +0200 - -python-biopython (1.43-1) unstable; urgency=low - - * New upstream release - * Adapted debian-med tags - - -- Philipp Benner <m...@philipp-benner.de> Tue, 27 Mar 2007 17:45:58 +0200 - -python-biopython (1.42-2) unstable; urgency=low - - * uscan support - * package tags - - -- Philipp Benner <m...@philipp-benner.de> Sat, 9 Sep 2006 14:39:18 +0200 - -python-biopython (1.42-1) unstable; urgency=low - - * New upstream release - - -- Philipp Benner <m...@philipp-benner.de> Sat, 22 Jul 2006 01:30:51 +0200 - -python-biopython (1.41-2.1) unstable; urgency=low - - * Non-maintainer upload. - * Update package to the last python policy (Closes: #373515). - - -- Pierre Habouzit <madco...@debian.org> Fri, 30 Jun 2006 13:45:39 +0200 - -python-biopython (1.41-2) unstable; urgency=low - - * suggests python-numeric-ext - * now with KDTree - - -- Philipp Benner <m...@philipp-benner.de> Mon, 20 Feb 2006 21:02:18 +0100 - -python-biopython (1.41-1) unstable; urgency=low - - * New upstream release - - -- Philipp Benner <m...@philipp-benner.de> Sat, 5 Nov 2005 20:15:03 +0100 - -python-biopython (1.40b-3) unstable; urgency=low - - * now using compatibility level 4 - * removed obsolete dependencies (closes: #328142) - - -- Philipp Benner <m...@philipp-benner.de> Wed, 14 Sep 2005 12:06:06 +0200 - -python-biopython (1.40b-2) unstable; urgency=low - - * Function `mmcif_get_string' implicitly converted to pointer - (closes: #326403) - * now standards version 3.6.2 - - -- Philipp Benner <m...@philipp-benner.de> Wed, 7 Sep 2005 09:53:30 +0200 - -python-biopython (1.40b-1) unstable; urgency=low - - * new release - * dropped support for python2.2 - - -- Philipp Benner <m...@philipp-benner.de> Tue, 05 Apr 2005 20:55:59 +0200 - -python-biopython (1.30-2) unstable; urgency=low - - * Fixed bugs in debian/rules and debian/control which prevented - porting the package. - * Using -fPIC to build shared lib KDTree. (closes: #278959) - - -- Philipp Benner <m...@philipp-benner.de> Sun, 10 Oct 2004 19:48:04 +0200 - -python-biopython (1.30-1) unstable; urgency=low - - * Initial Release. (closes: #157402) - - -- Philipp Benner <m...@philipp-benner.de> Tue, 21 Sep 2004 20:02:00 +0200 Copied: trunk/packages/python-biopython/tags/1.56-1/debian/changelog (from rev 6510, trunk/packages/python-biopython/trunk/debian/changelog) =================================================================== --- trunk/packages/python-biopython/tags/1.56-1/debian/changelog (rev 0) +++ trunk/packages/python-biopython/tags/1.56-1/debian/changelog 2011-04-10 17:58:26 UTC (rev 6511) @@ -0,0 +1,229 @@ +python-biopython (1.56-1) unstable; urgency=low + + * New upstream release. + + -- Philipp Benner <phil...@debian.org> Thu, 02 Dec 2010 17:30:09 +0000 + +python-biopython (1.54-1) unstable; urgency=low + + * New upstream release. + + -- Philipp Benner <phil...@debian.org> Fri, 28 May 2010 00:06:43 +0200 + +python-biopython (1.53-1) unstable; urgency=low + + * New upstream release. + + -- Philipp Benner <phil...@debian.org> Mon, 21 Dec 2009 15:30:37 +0000 + +python-biopython (1.52-1) unstable; urgency=low + + * New upstream release. + + -- Philipp Benner <phil...@debian.org> Wed, 30 Sep 2009 10:16:03 +0000 + +python-biopython (1.51final-2) unstable; urgency=low + + * Merged patch from ubuntu to make the package ready for + python2.6 (Closes: #543236). + + -- Philipp Benner <phil...@debian.org> Mon, 24 Aug 2009 09:29:27 +0000 + +python-biopython (1.51final-1) unstable; urgency=low + + * New upstream release + * debian/control: suggesting muscle, clustalw, mafft, emboss, and + blast2 for installation + + -- Philipp Benner <phil...@debian.org> Wed, 19 Aug 2009 10:41:19 +0000 + +python-biopython (1.51b-2) unstable; urgency=low + + * Dropped python-biopython-martel. + * Dropped dependency on python-egenix-mxtexttools. + * Removed DM-Upload-Allowed: yes. + + -- Philipp Benner <phil...@debian.org> Tue, 11 Aug 2009 19:47:52 +0000 + +python-biopython (1.51b-1) unstable; urgency=low + + * New upstream release + * debian/control: + - moved python-martel back to section python (python packages do not + use section oldlibs) + * debian/patches/02-fix-wise-test.patch + - removed (merged with upstream) + * debian/control: + - Changed the description of python-biopython-sql according to Peter Cock's + suggestions. + [Charles Plessy] + + -- Philipp Benner <pben...@uni-osnabrueck.de> Sat, 27 Jun 2009 15:14:52 +0000 + +python-biopython (1.49-1) unstable; urgency=low + + * New upstream release. + - uses NumPy rather than its precursor Numeric (Closes: #478457) + - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and + Bio.IntelliGenetics are deprecated. + - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete + and will be deprecated in a future release. + - Bio.Fasta is also considered to be obsolete and will eventually be + deprecated. + * debian/control: + - added myself as Uploader. + - depends on python-numpy instead of python-numeric-ext. + - moved python-martel to oldlibs section, priority extra as it is + deprecated, and indicate this in the description. + - build-depend on python-mysqldb and wise for the tests after building. + * Use Debhelper 7 (debian/co{ntrol,mpat}). + * debian/copyright: added myself to the Hall of Fame and updated to latest + draft of the machine-readable format. + * debian/watch: makes beta versions lower by prepending a tilde between + numbers and letters (1.49b -> 1.49~b). + * mmCIF support enabled: + - debian/patches/01-enable-mmCIF.patch: as the name indicates ;) + - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make. + - debian/control: build-depends on quilt. + * debian/python-biopython-doc.doc-base: corrected index name that was changed + upstream. + * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's + version of Wise. + * debian/rules: perform tests after build. + + -- Charles Plessy <ple...@debian.org> Fri, 23 Jan 2009 22:19:50 +0900 + +python-biopython (1.47-1) unstable; urgency=low + + * New upstream release + * Standards version 3.8.0 + + -- Philipp Benner <pben...@uni-osnabrueck.de> Sun, 03 Aug 2008 14:29:33 +0200 + +python-biopython (1.45-3) unstable; urgency=low + + * Removed dependency on python-numeric-ext since it is already in + the recommends field + + -- Philipp Benner <pben...@uni-osnabrueck.de> Sun, 01 Jun 2008 10:34:48 +0200 + +python-biopython (1.45-2) unstable; urgency=low + + * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package) + + -- Morten Kjeldgaard <m...@bioxray.au.dk> Wed, 23 Apr 2008 00:01:16 +0200 + +python-biopython (1.45-1) unstable; urgency=low + + * New upstream release. + * Added doc-base. + + -- Philipp Benner <pben...@uni-osnabrueck.de> Sat, 29 Mar 2008 12:20:41 +0100 + +python-biopython (1.44-3) unstable; urgency=low + + * New maintainer e-mail address. + * debian/control: Added DM-Upload-Allowed: yes. + + -- Philipp Benner <pben...@uni-osnabrueck.de> Mon, 14 Jan 2008 18:35:18 +0100 + +python-biopython (1.44-2) unstable; urgency=low + + * Moved suggested package python-numeric-ext to recommends field + (Closes: #452379). + * Moved wise from recommends to suggests field. + * Removed package tags from debian/control. + * Added homepage field to debian/control. + * Changed maintainer to Debian-Med Packaging Team. + * Removed .DS_Store.gz file from doc package. + + -- Philipp Benner <m...@philipp-benner.de> Thu, 22 Nov 2007 13:35:00 +0100 + +python-biopython (1.44-1) unstable; urgency=low + + * New upstream release. + * Machine interpretable copyright file. + + -- Philipp Benner <m...@philipp-benner.de> Fri, 16 Nov 2007 16:49:11 +0100 + +python-biopython (1.43-2) unstable; urgency=low + + * Rebuild for python-2.5 support (Closes: #424025). + + -- Philipp Benner <m...@philipp-benner.de> Thu, 14 Jun 2007 21:40:18 +0200 + +python-biopython (1.43-1) unstable; urgency=low + + * New upstream release + * Adapted debian-med tags + + -- Philipp Benner <m...@philipp-benner.de> Tue, 27 Mar 2007 17:45:58 +0200 + +python-biopython (1.42-2) unstable; urgency=low + + * uscan support + * package tags + + -- Philipp Benner <m...@philipp-benner.de> Sat, 9 Sep 2006 14:39:18 +0200 + +python-biopython (1.42-1) unstable; urgency=low + + * New upstream release + + -- Philipp Benner <m...@philipp-benner.de> Sat, 22 Jul 2006 01:30:51 +0200 + +python-biopython (1.41-2.1) unstable; urgency=low + + * Non-maintainer upload. + * Update package to the last python policy (Closes: #373515). + + -- Pierre Habouzit <madco...@debian.org> Fri, 30 Jun 2006 13:45:39 +0200 + +python-biopython (1.41-2) unstable; urgency=low + + * suggests python-numeric-ext + * now with KDTree + + -- Philipp Benner <m...@philipp-benner.de> Mon, 20 Feb 2006 21:02:18 +0100 + +python-biopython (1.41-1) unstable; urgency=low + + * New upstream release + + -- Philipp Benner <m...@philipp-benner.de> Sat, 5 Nov 2005 20:15:03 +0100 + +python-biopython (1.40b-3) unstable; urgency=low + + * now using compatibility level 4 + * removed obsolete dependencies (closes: #328142) + + -- Philipp Benner <m...@philipp-benner.de> Wed, 14 Sep 2005 12:06:06 +0200 + +python-biopython (1.40b-2) unstable; urgency=low + + * Function `mmcif_get_string' implicitly converted to pointer + (closes: #326403) + * now standards version 3.6.2 + + -- Philipp Benner <m...@philipp-benner.de> Wed, 7 Sep 2005 09:53:30 +0200 + +python-biopython (1.40b-1) unstable; urgency=low + + * new release + * dropped support for python2.2 + + -- Philipp Benner <m...@philipp-benner.de> Tue, 05 Apr 2005 20:55:59 +0200 + +python-biopython (1.30-2) unstable; urgency=low + + * Fixed bugs in debian/rules and debian/control which prevented + porting the package. + * Using -fPIC to build shared lib KDTree. (closes: #278959) + + -- Philipp Benner <m...@philipp-benner.de> Sun, 10 Oct 2004 19:48:04 +0200 + +python-biopython (1.30-1) unstable; urgency=low + + * Initial Release. (closes: #157402) + + -- Philipp Benner <m...@philipp-benner.de> Tue, 21 Sep 2004 20:02:00 +0200 Deleted: trunk/packages/python-biopython/tags/1.56-1/debian/control =================================================================== --- trunk/packages/python-biopython/trunk/debian/control 2011-04-10 17:10:54 UTC (rev 6509) +++ trunk/packages/python-biopython/tags/1.56-1/debian/control 2011-04-10 17:58:26 UTC (rev 6511) @@ -1,60 +0,0 @@ -Source: python-biopython -Priority: optional -Section: python -Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> -Uploaders: Philipp Benner <phil...@debian.org>, - Charles Plessy <ple...@debian.org> -Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, - python-reportlab, python-numpy, -# For the purpose of the tests - python-mysqldb, wise -XS-Python-Version: >= 2.3 -Standards-Version: 3.8.4 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/ -Homepage: http://biopython.org - -Package: python-biopython -Architecture: any -Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab -Provides: ${python:Provides} -Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) -Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) -XB-Python-Version: ${python:Versions} -Recommends: python-biopython-doc (= ${source:Version}) -Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 -Description: Python library for bioinformatics - The Biopython Project is an international association - of developers of freely available Python tools for - computational molecular biology. - . - It is a distributed collaborative effort to develop Python - libraries and applications which address the needs of - current and future work in bioinformatics. The source code - is made available under the Biopython License, which is - extremely liberal and compatible with almost every license - in the world. We work along with the Open Bioinformatics - Foundation, who generously provide web and CVS space for - the project. - -Package: python-biopython-doc -Section: doc -Architecture: all -Depends: ${misc:Depends} -Recommends: python-biopython (= ${source:Version}) -Description: Documentation for the Biopython library - Documentation and examples about how to use the Biopython - library. - -Package: python-biopython-sql -# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so. -Architecture: all -Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython -Provides: ${python:Provides} -Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) -Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) -XB-Python-Version: ${python:Versions} -Description: Biopython support for the BioSQL database schema - This is the Biopython interface to a BioSQL database (see www.biosql.org - for details). BioPerl, BioJava and BioRuby also provide their own BioSQL - interfaces onto the same shared SQL schema. Copied: trunk/packages/python-biopython/tags/1.56-1/debian/control (from rev 6510, trunk/packages/python-biopython/trunk/debian/control) =================================================================== --- trunk/packages/python-biopython/tags/1.56-1/debian/control (rev 0) +++ trunk/packages/python-biopython/tags/1.56-1/debian/control 2011-04-10 17:58:26 UTC (rev 6511) @@ -0,0 +1,60 @@ +Source: python-biopython +Priority: optional +Section: python +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Philipp Benner <phil...@debian.org>, + Charles Plessy <ple...@debian.org> +Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, + python-reportlab, python-numpy, +# For the purpose of the tests + python-mysqldb, wise +XS-Python-Version: >= 2.3 +Standards-Version: 3.9.1 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-biopython/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-biopython/trunk/ +Homepage: http://biopython.org + +Package: python-biopython +Architecture: any +Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, python-numpy, python-reportlab +Provides: ${python:Provides} +Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) +Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) +XB-Python-Version: ${python:Versions} +Recommends: python-biopython-doc (= ${source:Version}) +Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 +Description: Python library for bioinformatics + The Biopython Project is an international association + of developers of freely available Python tools for + computational molecular biology. + . + It is a distributed collaborative effort to develop Python + libraries and applications which address the needs of + current and future work in bioinformatics. The source code + is made available under the Biopython License, which is + extremely liberal and compatible with almost every license + in the world. We work along with the Open Bioinformatics + Foundation, who generously provide web and CVS space for + the project. + +Package: python-biopython-doc +Section: doc +Architecture: all +Depends: ${misc:Depends} +Recommends: python-biopython (= ${source:Version}) +Description: Documentation for the Biopython library + Documentation and examples about how to use the Biopython + library. + +Package: python-biopython-sql +# Todo: add www.biosql.org as "External Ressource" on packages.debian.org when the infrastructure will provide a way to do so. +Architecture: all +Depends: ${python:Depends}, ${misc:Depends}, python-mysqldb, python-biopython +Provides: ${python:Provides} +Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) +Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) +XB-Python-Version: ${python:Versions} +Description: Biopython support for the BioSQL database schema + This is the Biopython interface to a BioSQL database (see www.biosql.org + for details). BioPerl, BioJava and BioRuby also provide their own BioSQL + interfaces onto the same shared SQL schema. _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit