Author: plessy
Date: 2011-05-13 03:55:52 +0000 (Fri, 13 May 2011)
New Revision: 6828
Modified:
trunk/packages/embassy-phylip/trunk/debian/changelog
trunk/packages/embassy-phylip/trunk/debian/control
trunk/packages/embassy-phylip/trunk/debian/copyright
trunk/packages/embassy-phylip/trunk/debian/embassy-phylip.lintian-overrides
Log:
embassy-phylip (3.69+20100721-3) unstable; urgency=low
* Set RPATH with ?\226?\128?\156-Wl,--rpath?\226?\128?\157 as GCC 4.6 does
not accept ?\226?\128?\156-R?\226?\128?\157 anymore.
(debian/rules) LP: #770835.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-phylip.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
-- Charles Plessy <[email protected]> Thu, 12 May 2011 14:19:59 +0900
Modified: trunk/packages/embassy-phylip/trunk/debian/changelog
===================================================================
--- trunk/packages/embassy-phylip/trunk/debian/changelog 2011-05-12
14:23:30 UTC (rev 6827)
+++ trunk/packages/embassy-phylip/trunk/debian/changelog 2011-05-13
03:55:52 UTC (rev 6828)
@@ -1,9 +1,13 @@
-embassy-phylip (3.69+20100721-3) UNRELEASED; urgency=low
+embassy-phylip (3.69+20100721-3) unstable; urgency=low
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
- LP: #770835.
+ (debian/rules) LP: #770835.
+ * Incremented Standards-Version to reflect conformance with Policy 3.9.2
+ (debian/control, no changes needed).
+ * Updated debian/embassy-phylip.lintian-overrides for lintian 2.5.
+ * debian/copyright validated with config-edit.
- -- Charles Plessy <[email protected]> Sun, 08 May 2011 21:05:07 +0900
+ -- Charles Plessy <[email protected]> Thu, 12 May 2011 14:19:59 +0900
embassy-phylip (3.69+20100721-2) unstable; urgency=low
@@ -12,7 +16,7 @@
broken (debian/control, debian/rules).
* Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
libraries (debian/rules, debian/embassy-phylip.lintian-overrides).
- * Refreshed debian/copyright to test the latest DEP-5 format.
+ * Refreshed debian/copyright to test the latest DEP-5 format.
-- Charles Plessy <[email protected]> Thu, 23 Sep 2010 14:07:26 +0900
Modified: trunk/packages/embassy-phylip/trunk/debian/control
===================================================================
--- trunk/packages/embassy-phylip/trunk/debian/control 2011-05-12 14:23:30 UTC
(rev 6827)
+++ trunk/packages/embassy-phylip/trunk/debian/control 2011-05-13 03:55:52 UTC
(rev 6828)
@@ -14,7 +14,7 @@
libgd2-xpm-dev,
libmysqlclient-dev,
libpq-dev
-Standards-Version: 3.9.1
+Standards-Version: 3.9.2
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-phylip/trunk/?rev=0&sc=0
Vcs-Svn:
svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-phylip/trunk
Modified: trunk/packages/embassy-phylip/trunk/debian/copyright
===================================================================
--- trunk/packages/embassy-phylip/trunk/debian/copyright 2011-05-12
14:23:30 UTC (rev 6827)
+++ trunk/packages/embassy-phylip/trunk/debian/copyright 2011-05-13
03:55:52 UTC (rev 6828)
@@ -1,6 +1,6 @@
-Format: DEP-5
-Source: ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-(.*).tar.gz
-Disclaimer: This package is not part of the Debian operating system.
+Format: http://dep.debian.net/deps/dep5/
+Source: ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.tar.gz
+Disclaimer : This package is not part of the Debian operating system.
.
The embassy-phylip source and binary Debian packages are part of the
“non-free” area in the Debian archive. The packages in this area are not part
@@ -9,34 +9,36 @@
packages and provide infrastructure for non-free packages (such as our bug
tracking system and mailing lists). The licence of PHYLIPNEW does not forbid
Debian from using autobuilders to create binary packages.
-Copyright: Copyright 1993-2004 by the University of Washington.
-License:
- Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, and Andrew Keeffe.
- Permission is granted to copy and use this program provided no fee is
- charged for it and provided that this copyright notice is not removed.
Comment: It was confirmed on the EMBOSS User mailing list that the COPYING file
(GNU GPL) is there by error and the Phylip copyright file applies on all the
package. http://lists.open-bio.org/pipermail/emboss/2009-August/003713.html
+Files: *
+Copyright: © 1993-2004 by the University of Washington.
+License: Phylip
+ Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, and Andrew Keeffe.
+ Permission is granted to copy and use this program provided no fee is
+ charged for it and provided that this copyright notice is not removed.
+
Files: doc/*, emboss-doc/*
Copyright: 1986-2002 by the University of Washington.
-License:
- Written by Joseph Felsenstein. Permission is granted to copy this document
- provided that no fee is charged for it and that this copyright notice is not
- removed.
+License: Phylip-doc
+ Written by Joseph Felsenstein. Permission is granted to copy this document
+ provided that no fee is charged for it and that this copyright notice is not
+ removed.
Files: debian/*
-Copyright: 2009, Charles Plessy <[email protected]>
+Copyright: 2009–2011 Charles Plessy <[email protected]>
License: BOLA-1.0
- This work is provided 'as-is', without any express or implied warranty. In no
- event will the authors be held liable for any damages arising from the use of
- this work.
- .
- To all effects and purposes, this work is to be considered Public Domain.
- .
- .
- However, if you want to be "buena onda", you should:
- .
+ This work is provided 'as-is', without any express or implied warranty. In no
+ event will the authors be held liable for any damages arising from the use of
+ this work.
+ .
+ To all effects and purposes, this work is to be considered Public Domain.
+ .
+ .
+ However, if you want to be "buena onda", you should:
+ .
1. Not take credit for it, and give proper recognition to the authors.
2. Share your modifications, so everybody benefits from them.
3. Do something nice for the authors.
Modified:
trunk/packages/embassy-phylip/trunk/debian/embassy-phylip.lintian-overrides
===================================================================
--- trunk/packages/embassy-phylip/trunk/debian/embassy-phylip.lintian-overrides
2011-05-12 14:23:30 UTC (rev 6827)
+++ trunk/packages/embassy-phylip/trunk/debian/embassy-phylip.lintian-overrides
2011-05-13 03:55:52 UTC (rev 6828)
@@ -1,42 +1,3 @@
# The embassy packages use privately some of the EMBOSS libraries. They have
# the same upstream authors and are released together.
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fclique
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fconsense
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fcontml
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fcontrast
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdiscboot
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnacomp
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnadist
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnainvar
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnaml
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnamlk
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnamove
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnapars
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdnapenny
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdollop
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdolmove
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdolpenny
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdrawgram
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fdrawtree
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/ffactor
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/ffitch
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/ffreqboot
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fgendist
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fkitsch
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fmix
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fmove
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fneighbor
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fpars
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fpenny
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fproml
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fpromlk
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fprotdist
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fprotpars
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/frestboot
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/frestdist
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/frestml
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fretree
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fseqboot
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/fseqbootall
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/ftreedist
/usr/lib/emboss/lib
-embassy-phylip: binary-or-shlib-defines-rpath ./usr/bin/ftreedistpair
/usr/lib/emboss/lib
+embassy-phylip: binary-or-shlib-defines-rpath *
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