Author: plessy Date: 2011-08-27 03:16:39 +0000 (Sat, 27 Aug 2011) New Revision: 7563
Added: trunk/packages/mafft/tags/6.859-1/ trunk/packages/mafft/tags/6.859-1/debian/changelog trunk/packages/mafft/tags/6.859-1/debian/copyright Removed: trunk/packages/mafft/tags/6.859-1/debian/changelog trunk/packages/mafft/tags/6.859-1/debian/copyright Log: [svn-buildpackage] Tagging mafft 6.859-1 Deleted: trunk/packages/mafft/tags/6.859-1/debian/changelog =================================================================== --- trunk/packages/mafft/trunk/debian/changelog 2011-08-26 16:12:11 UTC (rev 7559) +++ trunk/packages/mafft/tags/6.859-1/debian/changelog 2011-08-27 03:16:39 UTC (rev 7563) @@ -1,119 +0,0 @@ -mafft (6.857-1) unstable; urgency=low - - * New upstream version. - * Enable multithread, correct FHS path (debian/rules). - * Removed extra manpage copies instead of patching Makefile and - installing via debhleper (debian/patches, debian/rules, debian/manpages). - * Removed debian/dirs, not needed anymore. - * Run the tests after installation, and allow them to fail (debian/rules). - * Build when running debian/rules build (override typo, Closes: #636634). - * Corrected VCS fields in debian/control. - * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 - (debian/control, no changes needed). - - -- Charles Plessy <[email protected]> Fri, 05 Aug 2011 09:54:09 +0900 - -mafft (6.850-1) unstable; urgency=low - - * New upstream version - * Adapted patch to new upstream - * Debhelper 8 (control + compat) - * debian/rules: Switch to dh - * debian/links: override broken symlinks created in Makefile - - -- Andreas Tille <[email protected]> Sat, 12 Mar 2011 00:02:43 +0100 - -mafft (6.833-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Wed, 17 Nov 2010 13:51:28 +0100 - -mafft (6.815-1) unstable; urgency=low - - * New upstream version - * Switch to source format 3.0 (quilt) - * Standards-Version: 3.9.1 (no changes needed) - - -- Andreas Tille <[email protected]> Thu, 05 Aug 2010 10:29:50 +0200 - -mafft (6.811-1) unstable; urgency=low - - * New upstream version - * Standards-Version: 3.8.4 (no changes needed) - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 13:08:06 +0200 - -mafft (6.717-1) unstable; urgency=low - - * New upstream version - * Added a few informations about Upstream in debian/upstream-metadata.yaml. - * Documented how this package is tested in debian/README.Debian. - * Refreshed debian/copyright, using the verbatim upstream license, - indented with a tabulation. - - -- Charles Plessy <[email protected]> Mon, 14 Dec 2009 13:02:59 +0900 - -mafft (6.716-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 12:39:12 +0100 - -mafft (6.713-1) unstable; urgency=low - - [ David Paleino ] - * debian/control: - - removed myself from Uploaders - - [ Andreas Tille ] - * New upstream version - * debian/control: - - Standards-Version: 3.8.3 (no changes needed) - - s/Debian-Med/Debian Med/ - - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby - script in /usr/bin using blast and lynx. - * debhelper 7 - * No need for debian/patches/Securisation-by-mktemp-usage.patch any more - * debian/watch: Handle -with.*-extensions naming - we are dealing - with the without-extensions tarball in Debian - - -- Andreas Tille <[email protected]> Mon, 28 Sep 2009 09:02:30 +0200 - -mafft (6.240-2) unstable; urgency=high - - [ Charles Plessy ] - * debian/control: - - Moved the Homepage: field out from the package's description. - - Enhances: t-coffee. - * Updated my email address. - * Securisation of the temorary files of mafft-homologs: - - debian/control: build-depend on quilt. - - debian/rules: modified to use quilt. - - debian/README.source: signals that the package uses quilt. - - debian/patches: added a patch to use non-guessable temporary files - (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs - Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, - and Michael Schutte for the final review. - - debian/mafft-homologs.1*, debian/README.Debian: document that the - program is patched. - - [ David Paleino ] - * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. - * debian/control: - - B-D updated (see above) - - added myself to Uploaders - - moved XS-Vcs-* fields to Vcs-* - - Updated to Standards-Version 3.7.3 (no changes needed) - * debian/rules: - - reflecting static build of manpages - - minor changes - - -- Charles Plessy <[email protected]> Mon, 25 Aug 2008 23:30:20 +0900 - -mafft (6.240-1) unstable; urgency=low - - * Initial release (Closes: #409640) - - -- Charles Plessy <[email protected]> Sat, 9 Jun 2007 12:06:43 +0900 - Copied: trunk/packages/mafft/tags/6.859-1/debian/changelog (from rev 7562, trunk/packages/mafft/trunk/debian/changelog) =================================================================== --- trunk/packages/mafft/tags/6.859-1/debian/changelog (rev 0) +++ trunk/packages/mafft/tags/6.859-1/debian/changelog 2011-08-27 03:16:39 UTC (rev 7563) @@ -0,0 +1,126 @@ +mafft (6.859-1) unstable; urgency=low + + * New upstream release. + * Converted debian/copyright to machine-readable (DEP 5) format. + + -- Charles Plessy <[email protected]> Sat, 27 Aug 2011 12:06:00 +0900 + +mafft (6.857-1) unstable; urgency=low + + * New upstream version. + * Enable multithread, correct FHS path (debian/rules). + * Removed extra manpage copies instead of patching Makefile and + installing via debhleper (debian/patches, debian/rules, debian/manpages). + * Removed debian/dirs, not needed anymore. + * Run the tests after installation, and allow them to fail (debian/rules). + * Build when running debian/rules build (override typo, Closes: #636634). + * Corrected VCS fields in debian/control. + * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 + (debian/control, no changes needed). + + -- Charles Plessy <[email protected]> Fri, 05 Aug 2011 09:54:09 +0900 + +mafft (6.850-1) unstable; urgency=low + + * New upstream version + * Adapted patch to new upstream + * Debhelper 8 (control + compat) + * debian/rules: Switch to dh + * debian/links: override broken symlinks created in Makefile + + -- Andreas Tille <[email protected]> Sat, 12 Mar 2011 00:02:43 +0100 + +mafft (6.833-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Wed, 17 Nov 2010 13:51:28 +0100 + +mafft (6.815-1) unstable; urgency=low + + * New upstream version + * Switch to source format 3.0 (quilt) + * Standards-Version: 3.9.1 (no changes needed) + + -- Andreas Tille <[email protected]> Thu, 05 Aug 2010 10:29:50 +0200 + +mafft (6.811-1) unstable; urgency=low + + * New upstream version + * Standards-Version: 3.8.4 (no changes needed) + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 13:08:06 +0200 + +mafft (6.717-1) unstable; urgency=low + + * New upstream version + * Added a few informations about Upstream in debian/upstream-metadata.yaml. + * Documented how this package is tested in debian/README.Debian. + * Refreshed debian/copyright, using the verbatim upstream license, + indented with a tabulation. + + -- Charles Plessy <[email protected]> Mon, 14 Dec 2009 13:02:59 +0900 + +mafft (6.716-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 12:39:12 +0100 + +mafft (6.713-1) unstable; urgency=low + + [ David Paleino ] + * debian/control: + - removed myself from Uploaders + + [ Andreas Tille ] + * New upstream version + * debian/control: + - Standards-Version: 3.8.3 (no changes needed) + - s/Debian-Med/Debian Med/ + - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby + script in /usr/bin using blast and lynx. + * debhelper 7 + * No need for debian/patches/Securisation-by-mktemp-usage.patch any more + * debian/watch: Handle -with.*-extensions naming - we are dealing + with the without-extensions tarball in Debian + + -- Andreas Tille <[email protected]> Mon, 28 Sep 2009 09:02:30 +0200 + +mafft (6.240-2) unstable; urgency=high + + [ Charles Plessy ] + * debian/control: + - Moved the Homepage: field out from the package's description. + - Enhances: t-coffee. + * Updated my email address. + * Securisation of the temorary files of mafft-homologs: + - debian/control: build-depend on quilt. + - debian/rules: modified to use quilt. + - debian/README.source: signals that the package uses quilt. + - debian/patches: added a patch to use non-guessable temporary files + (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs + Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, + and Michael Schutte for the final review. + - debian/mafft-homologs.1*, debian/README.Debian: document that the + program is patched. + + [ David Paleino ] + * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. + * debian/control: + - B-D updated (see above) + - added myself to Uploaders + - moved XS-Vcs-* fields to Vcs-* + - Updated to Standards-Version 3.7.3 (no changes needed) + * debian/rules: + - reflecting static build of manpages + - minor changes + + -- Charles Plessy <[email protected]> Mon, 25 Aug 2008 23:30:20 +0900 + +mafft (6.240-1) unstable; urgency=low + + * Initial release (Closes: #409640) + + -- Charles Plessy <[email protected]> Sat, 9 Jun 2007 12:06:43 +0900 + Deleted: trunk/packages/mafft/tags/6.859-1/debian/copyright =================================================================== --- trunk/packages/mafft/trunk/debian/copyright 2011-08-26 16:12:11 UTC (rev 7559) +++ trunk/packages/mafft/tags/6.859-1/debian/copyright 2011-08-27 03:16:39 UTC (rev 7563) @@ -1,49 +0,0 @@ -Name : MAFFT -Contact : Kazutaka Katoh <[email protected]> -Source : http://mafft.cbrc.jp/alignment/software/mafft-6.857-without-extensions-src.tgz - -Comment : Debian only distributes MAFFT without its extensions. - The mafft-6.6xx-with-extensions-src.tgz upstream packages have an ‘extensions’ - directory, which contains code from the Vienna RNA package, that does not allow - commercial use and is therefore unsuitable for Debian. - - -Copyright: (c) 2009 Kazutaka Katoh -License: Similar to BSD. - - Redistribution and use in source and binary forms, - with or without modification, are permitted provided - that the following conditions are met: - - Redistributions of source code must retain the - above copyright notice, this list of conditions - and the following disclaimer. Redistributions in - binary form must reproduce the above copyright - notice, this list of conditions and the following - disclaimer in the documentation and/or other - materials provided with the distribution. - - The name of the author may not be used to endorse - or promote products derived from this software without - specific prior written permission. - - THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, - BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF - MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, - OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED - AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, - STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR - OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF - THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY - OF SUCH DAMAGE. - -Files: debian/* -Copyright: (C) 2007 Charles Plessy <[email protected]>, - (C) 2009 Andreas Tille <[email protected]> -License: Same as mafft Copied: trunk/packages/mafft/tags/6.859-1/debian/copyright (from rev 7561, trunk/packages/mafft/trunk/debian/copyright) =================================================================== --- trunk/packages/mafft/tags/6.859-1/debian/copyright (rev 0) +++ trunk/packages/mafft/tags/6.859-1/debian/copyright 2011-08-27 03:16:39 UTC (rev 7563) @@ -0,0 +1,48 @@ +Format: http://dep.debian.net/deps/dep5/ +Source: http://mafft.cbrc.jp/alignment/software/mafft-6.859-without-extensions-src.tgz +Comment: Debian only distributes MAFFT without its extensions. + The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’ + directory, which contains code from the Vienna RNA package, that does not allow + commercial use and is therefore unsuitable for Debian. + +Files: * +Copyright: © 2009 Kazutaka Katoh +License: mafft + Redistribution and use in source and binary forms, + with or without modification, are permitted provided + that the following conditions are met: + . + Redistributions of source code must retain the + above copyright notice, this list of conditions + and the following disclaimer. Redistributions in + binary form must reproduce the above copyright + notice, this list of conditions and the following + disclaimer in the documentation and/or other + materials provided with the distribution. + . + The name of the author may not be used to endorse + or promote products derived from this software without + specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" + AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, + BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF + MERCHANTABILITY AND FITNESS FOR A PARTICULAR + PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT + OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, + OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED + AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, + STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR + OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF + THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY + OF SUCH DAMAGE. + +Files: debian/* +Copyright: (C) 2007 Charles Plessy <[email protected]>, + (C) 2009 Andreas Tille <[email protected]> +License: same-as-mafft + See above + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
