Author: plessy
Date: 2011-11-08 06:45:46 +0000 (Tue, 08 Nov 2011)
New Revision: 8471
Modified:
trunk/packages/muscle/trunk/debian/changelog
trunk/packages/muscle/trunk/debian/rules
Log:
Build from within debian/rules.
This allows to set CXXFLAGS et al through CDBS.
Modified: trunk/packages/muscle/trunk/debian/changelog
===================================================================
--- trunk/packages/muscle/trunk/debian/changelog 2011-11-08 06:44:05 UTC
(rev 8470)
+++ trunk/packages/muscle/trunk/debian/changelog 2011-11-08 06:45:46 UTC
(rev 8471)
@@ -9,11 +9,11 @@
* Repack usptream archive and implemented a get-orig-source target
(debian/rules, debian/README.source, debian/copyright).
* Use Debhelper 8 (debian/control, debian/compat).
+ * Build directly from debian/rules targets.
[ David Paleino ]
* debian/control:
- bumped Standards-Version to 3.8.0
- + enabled parallel building in debian/rules
- removed myself from Uploaders
-- David Paleino <[email protected]> Wed, 11 Jun 2008 16:23:28 +0200
Modified: trunk/packages/muscle/trunk/debian/rules
===================================================================
--- trunk/packages/muscle/trunk/debian/rules 2011-11-08 06:44:05 UTC (rev
8470)
+++ trunk/packages/muscle/trunk/debian/rules 2011-11-08 06:45:46 UTC (rev
8471)
@@ -1,21 +1,22 @@
#!/usr/bin/make -f
include /usr/share/cdbs/1/rules/debhelper.mk
-include /usr/share/cdbs/1/class/makefile.mk
+include /usr/share/cdbs/1/class/makefile-vars.mk
+DEB_MAKE_BUILD_TARGET :=
-ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
- NUMJOBS := -j$(patsubst parallel=%,%,$(filter
parallel=%,$(DEB_BUILD_OPTIONS)))
-endif
-MAKEFLAGS += $(NUMJOBS)
+CPPNames = aligngivenpath aligngivenpathsw aligntwomsas aligntwoprofs aln
alpha anchors bittraceback blosum62 blosumla clust cluster clwwt color cons
diaglist diffobjscore diffpaths difftrees difftreese distcalc distfunc
distpwkimura domuscle dosp dpreglist drawtree edgelist enumopts enumtostr
estring fasta fasta2 fastclust fastdist fastdistjones fastdistkbit fastdistkmer
fastdistmafft fastdistnuc fastscorepath2 finddiags finddiagsn glbalign
glbalign352 glbaligndiag glbalignle glbalignsimple glbalignsp glbalignspn
glbalignss glbalndimer globals globalslinux globalsosx globalsother
globalswin32 gonnet henikoffweight henikoffweightpb html hydro intmath local
main makerootmsa makerootmsab maketree mhack mpam200 msa msa2 msadistkimura msf
muscle muscleout nucmx nwdasimple nwdasimple2 nwdasmall nwrec nwsmall objscore
objscore2 objscoreda onexception options outweights pam200mafft params phy phy2
phy3 phy4 phyfromclust phyfromfile physeq phytofile posgap ppscore profdb
profile profilefrommsa progalign progress progressivealign pwpath readmx
realigndiffs realigndiffse refine refinehoriz refinesubfams refinetree
refinetreee refinevert refinew savebest scoredist scoregaps scorehistory
scorepp seq seqvect setblosumweights setgscweights setnewhandler spfast sptest
stabilize subfam subfams sw termgaps textfile threewaywt tomhydro traceback
tracebackopt tracebacksw treefrommsa typetostr upgma2 usage validateids vtml2
writescorefile
-DEB_MAKE_BUILD_TARGET = all
-DEB_MAKE_INVOKE += -e $(MAKEFLAGS)
-DEB_MAKE_ENVVARS = LDLIBS=-lm
+ObjNames = aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o
aln.o alpha.o anchors.o bittraceback.o blosum62.o blosumla.o clust.o cluster.o
clwwt.o color.o cons.o diaglist.o diffobjscore.o diffpaths.o difftrees.o
difftreese.o distcalc.o distfunc.o distpwkimura.o domuscle.o dosp.o dpreglist.o
drawtree.o edgelist.o enumopts.o enumtostr.o estring.o fasta.o fasta2.o
fastclust.o fastdist.o fastdistjones.o fastdistkbit.o fastdistkmer.o
fastdistmafft.o fastdistnuc.o fastscorepath2.o finddiags.o finddiagsn.o
glbalign.o glbalign352.o glbaligndiag.o glbalignle.o glbalignsimple.o
glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o
globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o
henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o
makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o
muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o
nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o
outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o
phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o
profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o
realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o
refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o
scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o
setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o
subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o
tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o
validateids.o vtml2.o writescorefile.o
+%.o: $.cpp
+ $(CXX) -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $(LDLIBS) $(CXXFLAGS)
$(CPPFLAGS) $(LDFLAGS) -o $@ $<
+
+build/muscle:: $(ObjNames)
+ g++ $(LDLIBS) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) -o muscle $(ObjNames)
+
clean::
- $(RM) *.o make.err make.out
- $(RM) muscle
+ $(RM) *.o make.err make.out muscle
SRC_TMP := $(shell mktemp --tmpdir --directory muscle-build.XXXXXXXXXX)
UP_TARBALL := $(SRC_TMP)/muscle$(DEB_UPSTREAM_VERSION)_src.tar.gz
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