Author: tille Date: 2011-11-10 08:14:05 +0000 (Thu, 10 Nov 2011) New Revision: 8510
Added: trunk/packages/mothur/trunk/debian/patches/drop_sse_option.patch Modified: trunk/packages/mothur/trunk/debian/changelog trunk/packages/mothur/trunk/debian/patches/makefile.patch trunk/packages/mothur/trunk/debian/patches/no_lcurses.patch trunk/packages/mothur/trunk/debian/patches/series Log: New upstream version and fix for FTBFS (-msse) Modified: trunk/packages/mothur/trunk/debian/changelog =================================================================== --- trunk/packages/mothur/trunk/debian/changelog 2011-11-10 07:19:10 UTC (rev 8509) +++ trunk/packages/mothur/trunk/debian/changelog 2011-11-10 08:14:05 UTC (rev 8510) @@ -1,3 +1,13 @@ +mothur (1.22.2-1) unstable; urgency=low + + * New upstream version + * debian/patches/drop_sse_option.patch: Fix for FTBFS: unrecognized + command line option '-msse2' (Thanks for the patch to + Nobuhiro Iwamatsu <[email protected]>) + Closes: #648255 + + -- Andreas Tille <[email protected]> Thu, 10 Nov 2011 08:38:32 +0100 + mothur (1.22.1-1) unstable; urgency=low [ Thorsten Alteholz ] Added: trunk/packages/mothur/trunk/debian/patches/drop_sse_option.patch =================================================================== --- trunk/packages/mothur/trunk/debian/patches/drop_sse_option.patch (rev 0) +++ trunk/packages/mothur/trunk/debian/patches/drop_sse_option.patch 2011-11-10 08:14:05 UTC (rev 8510) @@ -0,0 +1,15 @@ +Author: Nobuhiro Iwamatsu <[email protected]> +Date: Thu, 10 Nov 2011 00:39:01 UTC +Closes: #648255 +Description: Fix for FTBFS: cc1plus: error: unrecognized command line option '-msse2' +--- mothur-1.22.2.orig/uchime_src/mk ++++ mothur-1.22.2/uchime_src/mk +@@ -7,7 +7,7 @@ + for CPPName in $CPPNames + do + echo $CPPName >> /dev/tty +- g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr ++ g++ $ENV_GCC_OPTS -c -O2 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr + cat tmp.stderr + cat tmp.stderr >> mk.stderr + rm -f tmp.stderr Modified: trunk/packages/mothur/trunk/debian/patches/makefile.patch =================================================================== --- trunk/packages/mothur/trunk/debian/patches/makefile.patch 2011-11-10 07:19:10 UTC (rev 8509) +++ trunk/packages/mothur/trunk/debian/patches/makefile.patch 2011-11-10 08:14:05 UTC (rev 8510) @@ -1,7 +1,7 @@ Author: Steffen Moeller <[email protected]> Purpose: Comment MAC specific option ---- mothur-1.21.1.orig/makefile -+++ mothur-1.21.1/makefile +--- mothur-1.22.2.orig/makefile ++++ mothur-1.22.2/makefile @@ -26,7 +26,7 @@ #CXX = g++44 Modified: trunk/packages/mothur/trunk/debian/patches/no_lcurses.patch =================================================================== --- trunk/packages/mothur/trunk/debian/patches/no_lcurses.patch 2011-11-10 07:19:10 UTC (rev 8509) +++ trunk/packages/mothur/trunk/debian/patches/no_lcurses.patch 2011-11-10 08:14:05 UTC (rev 8510) @@ -1,9 +1,9 @@ Author: Andreas Tille <[email protected]> Date: 2011-01-30 Dscription: There is no need to link against lncurses because its symbols are not used ---- mothur-1.18.1.orig/makefile -+++ mothur-1.18.1/makefile -@@ -54,8 +54,7 @@ +--- mothur-1.22.2.orig/makefile ++++ mothur-1.22.2/makefile +@@ -59,8 +59,7 @@ ifeq ($(strip $(USEREADLINE)),yes) CXXFLAGS += -DUSE_READLINE LIBS = \ Modified: trunk/packages/mothur/trunk/debian/patches/series =================================================================== --- trunk/packages/mothur/trunk/debian/patches/series 2011-11-10 07:19:10 UTC (rev 8509) +++ trunk/packages/mothur/trunk/debian/patches/series 2011-11-10 08:14:05 UTC (rev 8510) @@ -1,2 +1,3 @@ makefile.patch no_lcurses.patch +drop_sse_option.patch _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
