Author: tille
Date: 2012-03-08 09:09:59 +0000 (Thu, 08 Mar 2012)
New Revision: 9945
Added:
trunk/packages/poa/trunk/debian/test/
trunk/packages/poa/trunk/debian/test/multidom.clustal
Modified:
trunk/packages/poa/trunk/debian/changelog
trunk/packages/poa/trunk/debian/rules
Log:
Fix dh_auto_test target and upload to unstable
Modified: trunk/packages/poa/trunk/debian/changelog
===================================================================
--- trunk/packages/poa/trunk/debian/changelog 2012-03-08 08:14:09 UTC (rev
9944)
+++ trunk/packages/poa/trunk/debian/changelog 2012-03-08 09:09:59 UTC (rev
9945)
@@ -1,4 +1,4 @@
-poa (2.0+20060928-3) UNRELEASED; urgency=low
+poa (2.0+20060928-3) unstable; urgency=low
[ Charles Plessy ]
* Updated my email address.
@@ -7,7 +7,7 @@
* Removed myself from Uploaders
[ Charles Plessy ]
- * Documented informations in ‘debian/upstream-metadata.yaml’.
+ * Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
[ Andreas Tille ]
@@ -22,9 +22,14 @@
- Standards-Version: 3.9.3 (no changes needed)
* debian/source/format: 3.0 (quilt)
* debhelper 9 (control+compat)
- * debian/rules + debhelper files: use short dh
* debian/copyright: Rewritten to fit DEP5 and verified using
cme fix dpkg-copyright
+ * debian/rules + debhelper files:
+ - use short dh
+ - do not try to redirect output of test to stdout which breaks inside
+ pbuilder
+ * debian/test/multidom.clustal: Store result of proposed test and compare
+ in dh_auto_test target
-- Andreas Tille <[email protected]> Thu, 08 Mar 2012 08:39:05 +0100
Modified: trunk/packages/poa/trunk/debian/rules
===================================================================
--- trunk/packages/poa/trunk/debian/rules 2012-03-08 08:14:09 UTC (rev
9944)
+++ trunk/packages/poa/trunk/debian/rules 2012-03-08 09:09:59 UTC (rev
9945)
@@ -19,5 +19,13 @@
$(MAKE) poa
override_dh_auto_test:
- ./$(PKG) -read_fasta multidom.seq -clustal /dev/stdout -v blosum80.mat
-
+ tmpfile=`mktemp` ; \
+ ./$(PKG) -read_fasta multidom.seq -clustal $$tmpfile -v blosum80.mat ; \
+ if cmp $$tmpfile $(CURDIR)/debian/test/multidom.clustal ; then \
+ echo "Test passed" ; \
+ rm -f $$tmpfile ; \
+ else \
+ echo "TEST FAILED!!!" ; \
+ echo "File $$tmpfile is different from $(CURDIR)/multidom.clustal"
; \
+ exit 1 ; \
+ fi
Added: trunk/packages/poa/trunk/debian/test/multidom.clustal
===================================================================
--- trunk/packages/poa/trunk/debian/test/multidom.clustal
(rev 0)
+++ trunk/packages/poa/trunk/debian/test/multidom.clustal 2012-03-08
09:09:59 UTC (rev 9945)
@@ -0,0 +1,177 @@
+CLUSTAL W (1.74) multiple sequence alignment
+
+
+ABL1_HUMAN
MLEICLKLVGCKSKKGLSSSSSCYLEEALQRPVASDFEPQGLSEAARWNS
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
KENLLAGPSENDPNLF---VALYDFVASGDN-------------------
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
----------------MEAIAKYDFKATADD-------------------
+MATK_HUMAN
-------------------------------MAGRGSLVSWRAFHGCDSA
+
+
+ABL1_HUMAN
----------------------------------------------TLSI
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
----------------------------------------------ELSF
+MATK_HUMAN
EELPRVSPRFLRAWHPPPVSARMPTRRWAPGTQCITKCEHTRPKPGELAF
+
+
+ABL1_HUMAN
TKGEKLRVLGYNHN-GEWCEAQTK-NGQ-GWVPSNYITPV------NSLE
+CRKL_HUMAN
----------------------------------------MSSARFDSSD
+GRB2_HUMAN
KRGDILKVLNEECD-QNWYKAEL--NGKDGFIPKNYI----------EMK
+MATK_HUMAN
RKGDVVTIL-EACENKSWYRVKHHTSGQEGLLAAGALRER------EALS
+
+
+ABL1_HUMAN
KHS------WYHGPVSRNAAEYLLSSGIN-GSFLVRESESSPGQRSISLR
+CRKL_HUMAN
RSA------WYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVS
+GRB2_HUMAN
PHP------WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVK
+MATK_HUMAN
ADPKLSLMPWFHGKISGQEAVQQLQ-PPEDGLFLVRESARHPGDYVLCVS
+
+
+ABL1_HUMAN
YEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYP
+CRKL_HUMAN
ENSRVSHYIINSLPNRRFKIGDQE-FDHLPALLEFYK-IHYLDTTTLIEP
+GRB2_HUMAN
FGNDVQHFKVLRDGAGK-YFLWVVKFNSLNELVDYHRS------TSV---
+MATK_HUMAN
FGRDVIHYRV-LHRDGHLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRP
+
+
+ABL1_HUMAN
APKRNKPTVYGVS-PNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS
+CRKL_HUMAN
APRYPSPPMGSVSAPN----------------------------------
+GRB2_HUMAN
--SRNQ-QIF-LR--D----------------------------------
+MATK_HUMAN
--KRKHGTKSAEEELARAGWLLNLQHLTLGAQIGEGEFGAVLQGEY--LG
+
+
+ABL1_HUMAN
LTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
QKVAVKNIKCDVT-AQAFLDETAVMTKMQHENLVRLLGVILHQG-LYIVM
+
+
+ABL1_HUMAN
EFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
EHVSKGNLVNFLRTRGRALVNTAQLLQFSLHVAEGMEYLESKKLVHRDLA
+
+
+ABL1_HUMAN
ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
ARNILVSEDLVAKVSDFGLAK---AERKGLDS-SRLPVKWTAPEALKHGK
+
+
+ABL1_HUMAN
FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCP
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
FTSKSDVWSFGVLLWEVFSYGRAPYPKMSLKEVSEAVEKGYRMEPPEGCP
+
+
+ABL1_HUMAN
EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKQGV
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
GPVHVLMSSCWEAEPARRPPF-----------------------------
+
+
+ABL1_HUMAN
RGAVSTLLQAPELPTKTRTSRRAAEHRDTTDVPEMPHSKGQGESDPLDHE
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
PAVSPLLPRKERGPPEGGLNEDERLLPKDKKTNLFSALIKKKKKTAPTPP
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
KRSSSFREMDGQPERRGAGEEEGRDISNGALAFTPLDTADPAKSPKPSNG
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
AGVPNGALRESGGSGFRSPHLWKKSSTLTSSRLATGEEEGGGSSSKRFLR
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
SCSASCVPHGAKDTEWRSVTLPRDLQSTGRQFDSSTFGGHKSEKPALPRK
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
RAGENRSDQVTRGTVTPPPRLVKKNEEAADEVFKDIMESSPGSSPPNLTP
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
KPLRRQVTVAPASGLPHKEEAEKGSALGTPAAAEPVTPTSKAGSGAPGGT
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
SKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPPAASAGKAGGKPS
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
QSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQPGEGLKKPVLPATPK
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
PQSAKPSGTPISPAPVPSTLPSASSALAGDQPSSTAFIPLISTRVSLRKT
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
RQPPERIASGAITKGVVLDSTEALCLAISRNSEQMASHSAVLEAGKNLYT
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
FCVSYVDSIQQMRNKFAFREAINKLENNLRELQICPATAGSGPAATQDFS
+CRKL_HUMAN
--------------------------------------------------
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
KLLSSVKEISDIVQR-----------------------------------
+CRKL_HUMAN
---------------LPTAEDNLEYVRTLYDF-PGNDAEDLPFKKGEILV
+GRB2_HUMAN
---------------IEQVPQQPTYVQALFDFDPQEDGE-LGFRRGDFIH
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
--------------------------------------------------
+CRKL_HUMAN
IIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIP
+GRB2_HUMAN
VMDNSDPNWWKGACH-GQTGMFPRNYVTPVNRN-----------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
--------------------------------------------------
+CRKL_HUMAN
EPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAY
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN
--------------------------------------------------
+CRKL_HUMAN
DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDE
+GRB2_HUMAN
--------------------------------------------------
+MATK_HUMAN
--------------------------------------------------
+
+
+ABL1_HUMAN ---------------------------------------
+CRKL_HUMAN NE-------------------------------------
+GRB2_HUMAN --V------------------------------------
+MATK_HUMAN ---RKLAEKLARELRSAGAPASVSGQDADGSTSPRSQEP
+
+
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