Andreas Tille pushed to branch master at Debian Med / unicycler
Commits: 79821ded by Andreas Tille at 2021-10-01T16:25:32+02:00 Fix watchfile to detect new versions on github - - - - - 382623a5 by Andreas Tille at 2021-10-01T16:31:05+02:00 routine-update: Standards-Version: 4.6.0 - - - - - 96160bac by Andreas Tille at 2021-10-01T16:31:05+02:00 routine-update: debhelper-compat 13 - - - - - 76ec5af9 by Andreas Tille at 2021-10-01T16:31:09+02:00 routine-update: Add salsa-ci file - - - - - cb1d5d09 by Andreas Tille at 2021-10-01T16:31:09+02:00 routine-update: Rules-Requires-Root: no - - - - - 0ec86eba by Andreas Tille at 2021-10-01T16:31:11+02:00 Set upstream metadata fields: Bug-Database, Bug-Submit. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html - - - - - 064b7adb by Andreas Tille at 2021-10-01T16:40:36+02:00 Seven really strange errors in test suite. The dependencies that are claimed missing are clearly available - - - - - 5 changed files: - debian/changelog - debian/control - + debian/salsa-ci.yml - debian/upstream/metadata - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,9 +1,81 @@ unicycler (0.4.9+dfsg-1) UNRELEASED; urgency=medium + [ Nilesh Patra ] * d/watch: Fix watch regex * New upstream version 0.4.9+dfsg + + [ Andreas Tille ] + * Fix watchfile to detect new versions on github + * Standards-Version: 4.6.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Bug-Database, Bug-Submit. + TODO: Error: Unicycler requires SPAdes v3.6.2 - v3.13.0 +====================================================================== +FAIL: test_bad_pilon (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 97, in test_bad_pilon + self.assertTrue('Pilon was found' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_bowtie2_build_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 64, in test_bowtie2_build_not_found + self.assertTrue('could not find bowtie2-build' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_bowtie2_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 70, in test_bowtie2_not_found + self.assertTrue('could not find bowtie2' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_java_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 82, in test_java_not_found + self.assertTrue('could not find java' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_makeblastdb_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 52, in test_makeblastdb_not_found + self.assertTrue('could not find makeblastdb' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_samtools_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 76, in test_samtools_not_found + self.assertTrue('could not find samtools' in stderr) +AssertionError: False is not true + +====================================================================== +FAIL: test_tblastn_not_found (test.test_dependencies.TestDependencies) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/unicycler-0.4.9+dfsg/.pybuild/cpython3_3.9_unicycler/build/test/test_dependencies.py", line 58, in test_tblastn_not_found + self.assertTrue('could not find tblastn' in stderr) +AssertionError: False is not true + +---------------------------------------------------------------------- +Ran 234 tests in 35.163s + +FAILED (failures=7) + + -- Nilesh Patra <[email protected]> Sun, 08 Aug 2021 00:50:46 +0530 unicycler (0.4.8+dfsg-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -4,25 +4,26 @@ Uploaders: Andreas Tille <[email protected]>, Liubov Chuprikova <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, - default-jdk, + default-jdk <!nocheck>, bcftools, - bowtie2, + bowtie2 <!nocheck>, miniasm, - ncbi-blast+, - pilon, + ncbi-blast+ <!nocheck>, + pilon <!nocheck>, racon, - samtools, + samtools <!nocheck>, spades (>= 3.13.1), libseqan2-dev, zlib1g-dev -Standards-Version: 4.4.1 +Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/unicycler Vcs-Git: https://salsa.debian.org/med-team/unicycler.git Homepage: https://github.com/rrwick/Unicycler +Rules-Requires-Root: no Package: unicycler Architecture: any ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,3 +1,5 @@ +Bug-Database: https://github.com/rrwick/Unicycler/issues +Bug-Submit: https://github.com/rrwick/Unicycler/issues/new Reference: - Author: > Ryan R. Wick and Louise M. Judd and Claire L. Gorrie and Kathryn ===================================== debian/watch ===================================== @@ -1,4 +1,4 @@ version=4 opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \ - https://github.com/rrwick/Unicycler/releases .*/archive/.*/v?@ANY_VERSION@@ARCHIVE_EXT@ + https://github.com/rrwick/Unicycler/releases .*/.*/v?@ANY_VERSION@@ARCHIVE_EXT@ View it on GitLab: https://salsa.debian.org/med-team/unicycler/-/compare/50a1cc570d350eefe4ebd1fe44137a2c2f520817...064b7adb5e0637a81b790000d56705c2c0e42117 -- View it on GitLab: https://salsa.debian.org/med-team/unicycler/-/compare/50a1cc570d350eefe4ebd1fe44137a2c2f520817...064b7adb5e0637a81b790000d56705c2c0e42117 You're receiving this email because of your account on salsa.debian.org.
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