Andreas Tille pushed to branch upstream at Debian Med / drop-seq
Commits: 763ed8c0 by Andreas Tille at 2021-10-12T09:38:35+02:00 New upstream version 2.4.1+dfsg - - - - - 30 changed files: - build.xml - public.iml - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecords.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java - src/java/org/broadinstitute/dropseqrna/annotation/ValidateReference.java - src/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrieval.java - src/java/org/broadinstitute/dropseqrna/barnyard/DGECommandLineBase.java - src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java - src/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGene.java - src/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscripts.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCounts.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsBestGeneIterator.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsGeneIteratorI.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtils.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCounts.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPBasePileUp.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPInfoCollection.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPIntervalRecordI.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileup.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIterator.java - src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapper.java - src/java/org/broadinstitute/dropseqrna/beadsynthesis/DetectBeadSynthesisErrors.java - src/java/org/broadinstitute/dropseqrna/censusseq/CensusSeq.java - src/java/org/broadinstitute/dropseqrna/censusseq/CsiAnalysis.java - src/java/org/broadinstitute/dropseqrna/censusseq/CsiMetrics.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/763ed8c0f4837f541a449cc06c564738b22b0225 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/763ed8c0f4837f541a449cc06c564738b22b0225 You're receiving this email because of your account on salsa.debian.org.
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