Andreas Tille pushed to branch upstream at Debian Med / drop-seq
Commits: 06561ca1 by Andreas Tille at 2022-01-16T16:25:01+01:00 New upstream version 2.5.1+dfsg - - - - - 26 changed files: - build.xml - src/ant/defs.xml - src/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtils.java - src/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlat.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFParser.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GTFRecord.java - src/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLength.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReader.java - src/java/org/broadinstitute/dropseqrna/annotation/GeneFromGTFBuilder.java - src/java/org/broadinstitute/dropseqrna/annotation/ReduceGtf.java - src/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollector.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequency.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReader.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyWriter.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamples.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/BestSampleAssignmentForCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellAssignmentUtils.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollection.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellContaminationParser.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollection.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoublets.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/IntervalAndFrequencyResult.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignments.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCell.java - + src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilities.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62 -- View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/commit/06561ca1202505fc3ed17b96e303f57e66dacb62 You're receiving this email because of your account on salsa.debian.org.
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