Andreas Tille pushed to branch upstream at Debian Med / mosdepth
Commits:
6074408c by Andreas Tille at 2022-02-19T20:57:58+01:00
New upstream version 0.3.3+ds
- - - - -
3 changed files:
- CHANGES.md
- mosdepth.nim
- mosdepth.nimble
Changes:
=====================================
CHANGES.md
=====================================
@@ -1,3 +1,7 @@
+v0.3.3
+======
++ allow specifying a custom index by passing
'/path/to/bam##idx##/other-path/to/index.bai'
+
v0.3.1
======
+ fix bug with regions and d4 that would cause error even when --d4 was not
used.
=====================================
mosdepth.nim
=====================================
@@ -775,7 +775,7 @@ when(isMainModule):
when not defined(release) and not defined(lto):
stderr.write_line "[mosdepth] WARNING: built in debug mode; will be slow"
- let version = "mosdepth 0.3.2"
+ let version = "mosdepth 0.3.3"
let env_fasta = getEnv("REF_PATH")
var doc = format("""
$version
=====================================
mosdepth.nimble
=====================================
@@ -1,13 +1,13 @@
# Package
-version = "0.3.2"
+version = "0.3.3"
author = "Brent Pedersen"
description = "fast depth"
license = "MIT"
# Dependencies
-requires "hts >= 0.3.1", "docopt >= 0.6.8", "nim >= 1.0.0",
"https://github.com/brentp/d4-nim";
+requires "hts >= 0.3.21", "docopt >= 0.6.8", "nim >= 1.0.0",
"https://github.com/brentp/d4-nim";
bin = @["mosdepth"]
skipDirs = @["tests"]
View it on GitLab:
https://salsa.debian.org/med-team/mosdepth/-/commit/6074408c97dc50283bc061e8931c652b01766bfb
--
View it on GitLab:
https://salsa.debian.org/med-team/mosdepth/-/commit/6074408c97dc50283bc061e8931c652b01766bfb
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