Étienne Mollier pushed to branch master at Debian Med / mcaller
Commits: 5225a27e by Étienne Mollier at 2022-04-24T09:40:53+02:00 Add prefixes.patch, fixing FTBFS with sklearn 1.0.2-1 - - - - - 8b8cf2fa by Étienne Mollier at 2022-04-24T09:47:54+02:00 initialize changelog - - - - - f931f293 by Étienne Mollier at 2022-04-24T10:03:28+02:00 prefixes.patch forwarded upstream Gbp-Dch: ignore - - - - - 7c2a3d97 by Étienne Mollier at 2022-04-24T10:04:37+02:00 mcaller.lintian-overrides: remove unused breakout-link overrides - - - - - 4aae0f15 by Étienne Mollier at 2022-04-24T10:05:44+02:00 ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/mcaller.lintian-overrides - + debian/patches/prefixes.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +mcaller (1.0.3+git20210624.b415090-2) unstable; urgency=medium + + * Team upload. + * Add prefixes.patch, fixing FTBFS with sklearn 1.0.2-1. + * mcaller.lintian-overrides: remove unused breakout-link overrides + + -- Étienne Mollier <[email protected]> Sun, 24 Apr 2022 10:05:20 +0200 + mcaller (1.0.3+git20210624.b415090-1) unstable; urgency=medium * Initial release (Closes: #969558) ===================================== debian/mcaller.lintian-overrides ===================================== @@ -1,6 +1,2 @@ # It is a "picture" mcaller: description-starts-with-leading-spaces -# The debian-med separate bin for compatibility with .py file endings -mcaller: breakout-link usr/lib/debian-med/bin/compare_genomes.py -> usr/share/mCaller/compare_genomes.py -mcaller: breakout-link usr/lib/debian-med/bin/mCaller.py -> usr/share/mCaller/mCaller.py -mcaller: breakout-link usr/lib/debian-med/bin/make_bed.py -> usr/share/mCaller/make_bed.py ===================================== debian/patches/prefixes.patch ===================================== @@ -0,0 +1,62 @@ +Description: prefix multilayer_perceptron and label with '_' + Apparently, mcaller relies on the presence of different sklearn versions + which expose multilayer_perceptron and label instead, possibly older. +Author: Étienne Mollier <[email protected]> +Forwarded: https://github.com/al-mcintyre/mCaller/issues/34#issuecomment-1107786037 +Last-Update: 2022-04-24 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- mcaller.orig/r94_model_NN_6_m6A.pkl ++++ mcaller/r94_model_NN_6_m6A.pkl +@@ -1,7 +1,7 @@ + ccopy_reg + _reconstructor + p1 +-(csklearn.neural_network.multilayer_perceptron ++(csklearn.neural_network._multilayer_perceptron + MLPClassifier + p2 + c__builtin__ +@@ -68,7 +68,7 @@ + tbsS'_label_binarizer' + p20 + g1 +-(csklearn.preprocessing.label ++(csklearn.preprocessing._label + LabelBinarizer + p21 + g3 +@@ -445,4 +445,4 @@ + S'p\xe7\xbe\xba\x87\xceM?' + tbasg93 + F0.001 +-sbsb. +\ No newline at end of file ++sbsb. +--- mcaller.orig/r95_twobase_model_NN_6_m6A.pkl ++++ mcaller/r95_twobase_model_NN_6_m6A.pkl +@@ -4,7 +4,7 @@ + ccopy_reg + _reconstructor + p3 +-(csklearn.neural_network.multilayer_perceptron ++(csklearn.neural_network._multilayer_perceptron + MLPClassifier + p4 + c__builtin__ +@@ -71,7 +71,7 @@ + tbsS'_label_binarizer' + p22 + g3 +-(csklearn.preprocessing.label ++(csklearn.preprocessing._label + LabelBinarizer + p23 + g5 +@@ -1013,4 +1013,4 @@ + S'Id\x1f\x8eJ\x03\x86\xbf' + tbasg156 + F0.001 +-sbsbs. +\ No newline at end of file ++sbsbs. ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ shebang.patch python2to3.patch +prefixes.patch View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/compare/9d218aa1c2879da5e935d5cbfbec8f6f61e89ab1...4aae0f15eeb291f9de94748f748a15dfa8615cad -- View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/compare/9d218aa1c2879da5e935d5cbfbec8f6f61e89ab1...4aae0f15eeb291f9de94748f748a15dfa8615cad You're receiving this email because of your account on salsa.debian.org.
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