Andreas Tille pushed to branch master at Debian Med / htslib
Commits: c49ca309 by Andreas Tille at 2022-09-30T10:22:03+02:00 Make sure all symbols of libhts will be really found - - - - - 2 changed files: - + debian/patches/fix_sequence_of_linked_libs.patch - debian/patches/series Changes: ===================================== debian/patches/fix_sequence_of_linked_libs.patch ===================================== @@ -0,0 +1,24 @@ +Author: Andreas Tille <[email protected]> +Last-Update: Thu, 29 Sep 2022 13:39:16 +0200 +Origin: https://lists.debian.org/debian-med/2022/09/msg00053.html +Description: Make sure all symbols of libhts will be really found + +--- a/Makefile ++++ b/Makefile +@@ -486,13 +486,13 @@ htscodecs/htscodecs/rANS_static32x16pr_a + htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.pico: TARGET_CFLAGS = $(HTS_CFLAGS_SSE4) + + bgzip: bgzip.o libhts.a +- $(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) -lpthread ++ $(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) libhts.a -lpthread + + htsfile: htsfile.o libhts.a +- $(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) -lpthread ++ $(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) libhts.a -lpthread + + tabix: tabix.o libhts.a +- $(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) -lpthread ++ $(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) libhts.a -lpthread + + bgzip.o: bgzip.c config.h $(htslib_bgzf_h) $(htslib_hts_h) + htsfile.o: htsfile.c config.h $(htslib_hfile_h) $(htslib_hts_h) $(htslib_sam_h) $(htslib_vcf_h) ===================================== debian/patches/series ===================================== @@ -7,3 +7,4 @@ fix_float_precision cram_to_bam_export.patch # plugins_to_lib.patch - can probably be removed disable_plugin_loading_test.patch +fix_sequence_of_linked_libs.patch View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/c49ca309c0c5ac9ce92b3e0a959d692bb92a0132 -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/commit/c49ca309c0c5ac9ce92b3e0a959d692bb92a0132 You're receiving this email because of your account on salsa.debian.org.
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