Andreas Tille pushed to branch master at Debian Med / minimac4
Commits:
018a2b29 by Andreas Tille at 2022-10-27T13:54:13+02:00
Make sure lzma can be linked
- - - - -
3 changed files:
- debian/control
- + debian/patches/lzma.patch
- debian/patches/series
Changes:
=====================================
debian/control
=====================================
@@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13),
cmake,
zlib1g-dev,
libstatgen-dev,
- libomp-dev,
libshrinkwrap-dev,
libsavvy-dev,
- libomp-jonathonl-dev,
+ libomp-jonathonl-dev (>= 0.0+git20211216.5228495),
+ liblzma-dev,
libzstd-dev
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/minimac4
=====================================
debian/patches/lzma.patch
=====================================
@@ -0,0 +1,15 @@
+Author: Andreas Tille <[email protected]>
+Last-Update: Thu, 22 Sep 2022 09:28:59 +0200
+Description: Make sure lzma can be linked
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -30,7 +30,7 @@ add_executable(minimac4
+ src/unique_haplotype.cpp src/unique_haplotype.hpp
+ src/main.cpp)
+
+-target_link_libraries(minimac4 savvy ${OMPP_LIBRARY} Threads::Threads)
++target_link_libraries(minimac4 savvy ${OMPP_LIBRARY} lzma Threads::Threads)
+
+ install(TARGETS minimac4 RUNTIME DESTINATION bin)
+
=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
Use_shared_zlib.patch
+lzma.patch
View it on GitLab:
https://salsa.debian.org/med-team/minimac4/-/commit/018a2b29b48cbe8c37ed7e1ce1f311e7e0c02f93
--
View it on GitLab:
https://salsa.debian.org/med-team/minimac4/-/commit/018a2b29b48cbe8c37ed7e1ce1f311e7e0c02f93
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