Pierre Gruet pushed to branch master at Debian Med / libsbml
Commits: d20c5387 by Pierre Gruet at 2022-11-26T13:51:08+01:00 Fixing a wrong import in AutoTestRunner.java - - - - - fd954e4e by Pierre Gruet at 2022-11-26T13:51:39+01:00 Fixing a missing import in the matlab bindings - - - - - 855b70b0 by Pierre Gruet at 2022-11-26T13:56:19+01:00 Updating changelog, with TODO - - - - - 4 changed files: - debian/changelog - + debian/patches/missing_header.patch - debian/patches/series - + debian/patches/wrong_import_in_AutoTestRunner.patch Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,15 @@ libsbml (5.19.7+dfsg-1) UNRELEASED; urgency=medium + [ Andreas Tille ] * Upstream moved to Github * New upstream version - TODO: /build/libsbml-5.19.7+dfsg/src/bindings/java/AutoTestRunner.java:48: error: package org.sbml.libsbml.test does not exist - -- Andreas Tille <[email protected]> Fri, 25 Nov 2022 06:48:01 +0100 + [ Pierre Gruet ] + * Fixing a wrong import in AutoTestRunner.java + * Fixing a missing import in the matlab bindings + TODO: dh_missing: error: missing files, aborting + + -- Pierre Gruet <[email protected]> Sat, 26 Nov 2022 13:51:43 +0100 libsbml (5.19.0+dfsg-3) unstable; urgency=medium ===================================== debian/patches/missing_header.patch ===================================== @@ -0,0 +1,18 @@ +Description: the FbcAssociation header has to be included in the matlab + bindings, as they use the FbcAssociation class +Author: Pierre Gruet <[email protected]> +Forwarded: https://github.com/sbmlteam/libsbml/issues/282 +Last-Update: 2022-11-26 + +--- a/src/bindings/matlab/StructureFields.cpp ++++ b/src/bindings/matlab/StructureFields.cpp +@@ -9,6 +9,9 @@ + #include <sbml/extension/SBasePlugin.h> + #include <sbml/extension/SBMLExtensionRegistry.h> + ++#ifdef USE_FBC ++#include <sbml/packages/fbc/sbml/FbcAssociation.h> ++#endif + + #ifdef USE_OCTAVE + // this function is not implemented in octave ===================================== debian/patches/series ===================================== @@ -10,3 +10,5 @@ javadoc.patch remove_SBMLDoclet.patch fix_build_issue.patch fix_python_interpreter.patch +wrong_import_in_AutoTestRunner.patch +missing_header.patch ===================================== debian/patches/wrong_import_in_AutoTestRunner.patch ===================================== @@ -0,0 +1,20 @@ +Description: there is no class in org/sbml/libsbml/test, looking in its + subdirectories instead +Author: Pierre Gruet <[email protected]> +Forwarded: https://github.com/sbmlteam/libsbml/issues/281 +Last-Update: 2022-11-26 + +--- a/src/bindings/java/AutoTestRunner.java ++++ b/src/bindings/java/AutoTestRunner.java +@@ -45,7 +45,10 @@ + import java.util.regex.Matcher; + import java.lang.reflect.*; + +-import org.sbml.libsbml.test.*; ++import org.sbml.libsbml.test.annotation.*; ++import org.sbml.libsbml.test.math.*; ++import org.sbml.libsbml.test.sbml.*; ++import org.sbml.libsbml.test.xml.*; + import org.sbml.libsbml.*; + + public class AutoTestRunner View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/e84e6662bd866f3808d56b423d9b1b16badb7c89...855b70b0d1a8187e92971af0d532929544ba9263 -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/e84e6662bd866f3808d56b423d9b1b16badb7c89...855b70b0d1a8187e92971af0d532929544ba9263 You're receiving this email because of your account on salsa.debian.org.
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