Pierre Gruet pushed to branch master at Debian Med / picard-tools
Commits: 1c5e7dd6 by Pierre Gruet at 2023-06-20T16:15:45+02:00 New upstream version 3.0.0+dfsg - - - - - f920cde4 by Pierre Gruet at 2023-06-20T16:16:51+02:00 Update upstream source from tag 'upstream/3.0.0+dfsg' Update to upstream version '3.0.0+dfsg' with Debian dir 15cec942ed23736450ea7b52aa7bebe5b14816a9 - - - - - 8a5af847 by Pierre Gruet at 2023-06-20T16:41:33+02:00 Refreshing patches - - - - - 253eb10e by Pierre Gruet at 2023-06-20T16:41:51+02:00 Raising Standards version to 4.6.2 (no change) - - - - - 729299b4 by Pierre Gruet at 2023-06-20T16:42:22+02:00 Updating changelog - - - - - 6d167d52 by Pierre Gruet at 2023-06-20T16:46:34+02:00 Removing unnecessary versioned B-D - - - - - 57a122af by Pierre Gruet at 2023-07-04T14:10:09+02:00 Refreshing patches - - - - - 75684d98 by Pierre Gruet at 2023-07-04T14:10:37+02:00 Adding nashorn to d/maven.ignoreRules - - - - - 4861fb75 by Pierre Gruet at 2023-07-04T14:14:50+02:00 Running the build-time tests from a directory with no '+' in its path - - - - - 0f4ef03d by Pierre Gruet at 2023-07-04T15:16:51+02:00 Updating changelog - - - - - 6caa6eae by Pierre Gruet at 2023-07-04T15:23:33+02:00 Omitting the long-failing jar invocation in the build-time tests - - - - - 393338cd by Pierre Gruet at 2023-07-04T15:23:41+02:00 Upload to unstable - - - - - 30 changed files: - .github/ISSUE_TEMPLATE.md - .github/PULL_REQUEST_TEMPLATE.md - + .github/workflows/tests.yml - − .travis.yml - Dockerfile - README.md - build.gradle - debian/changelog - debian/control - + debian/maven.ignoreRules - debian/patches/10-build.xml.patch - debian/patches/20-shadowjar.patch - debian/patches/40-tests-fix-testng.patch - debian/patches/com_sun_javadoc_removal_in_openjdk17.patch - debian/patches/gradle_openjdk17_incompatibility.patch - debian/patches/omit_BamToBfq.patch - debian/rules - gradle/wrapper/gradle-wrapper.properties - gradlew - src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java - src/main/java/picard/analysis/CollectMultipleMetrics.java - src/main/java/picard/analysis/CompareMetrics.java - src/main/java/picard/arrays/CollectArraysVariantCallingMetrics.java - src/main/java/picard/arrays/GtcToVcf.java - src/main/java/picard/arrays/VcfToAdpc.java - src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifest.java - src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecord.java - src/main/java/picard/arrays/illumina/Build37ExtendedIlluminaManifestRecordCreator.java - src/main/java/picard/arrays/illumina/CreateExtendedIlluminaManifest.java - src/main/java/picard/arrays/illumina/IlluminaManifest.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/463a37af2b5cb68db61363460c852d6346992163...393338cdd2a9ba4badf29d42229f44dea10e4e4b -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/463a37af2b5cb68db61363460c852d6346992163...393338cdd2a9ba4badf29d42229f44dea10e4e4b You're receiving this email because of your account on salsa.debian.org.
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