vimerbf pushed to branch master at Debian Med / mmseqs2
Commits: 1e02a98a by Bo YU at 2023-07-28T12:01:22+08:00 fix gcc-13 build issue Signed-off-by: Bo YU <[email protected]> - - - - - 3 changed files: - debian/changelog - + debian/patches/fix-gcc-13.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +mmseqs2 (14-7e284+ds-2) unstable; urgency=medium + + * Team upload. + * Add fix-gcc-13.patch to fix gcc-13 build issue. (Closes: #1037779) + + -- Bo YU <[email protected]> Fri, 28 Jul 2023 10:31:23 +0800 + mmseqs2 (14-7e284+ds-1) unstable; urgency=medium * Team upload. ===================================== debian/patches/fix-gcc-13.patch ===================================== @@ -0,0 +1,47 @@ +Description: fix gcc-13 build + upstream has fixed the issue: + https://github.com/soedinglab/MMseqs2/commit/3e436173321a2d0365a08bfb3b281108ed9ad414 +Bug: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037779 +Last-Update: 2023-07-28 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- a/src/commons/Debug.h ++++ b/src/commons/Debug.h +@@ -8,6 +8,7 @@ + #include <unistd.h> + #include <stdlib.h> + #include <cstddef> ++#include <cstdint> + #include <sys/stat.h> + + class TtyCheck { +--- a/src/commons/Parameters.h ++++ b/src/commons/Parameters.h +@@ -9,6 +9,7 @@ + #include <map> + #include <typeinfo> + #include <cstddef> ++#include <cstdint> + #include <utility> + + #include "Command.h" +--- a/src/commons/Util.h ++++ b/src/commons/Util.h +@@ -3,6 +3,7 @@ + + #include <string> + #include <cstddef> ++#include <cstdint> + #include <cstring> + #include <vector> + #include <limits> +--- a/src/prefiltering/Indexer.h ++++ b/src/prefiltering/Indexer.h +@@ -7,6 +7,7 @@ + // + + ++#include <cstdint> + #include <string> + #include <iostream> + ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ fix_tests.patch fix_util_installation.patch use_system_gzstream.patch +fix-gcc-13.patch View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/commit/1e02a98aa0d4fca16eb577204ed17c457ab7086a -- View it on GitLab: https://salsa.debian.org/med-team/mmseqs2/-/commit/1e02a98aa0d4fca16eb577204ed17c457ab7086a You're receiving this email because of your account on salsa.debian.org.
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