Author: tille Date: 2012-05-31 07:48:05 +0000 (Thu, 31 May 2012) New Revision: 11119
Added: trunk/packages/R/r-cran-surveillance/trunk/debian/README.test trunk/packages/R/r-cran-surveillance/trunk/debian/doc-base Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/changelog trunk/packages/R/r-cran-surveillance/trunk/debian/compat trunk/packages/R/r-cran-surveillance/trunk/debian/control trunk/packages/R/r-cran-surveillance/trunk/debian/copyright trunk/packages/R/r-cran-surveillance/trunk/debian/rules Log: * Needs rebuild using latest R to get proper NAMESPACE * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Build-Depends: r-base-dev (>= 2.14.2~20120222) * debian/rules: - Remove R:Depends substitution variable which is now included in /usr/share/R/debian/r-cran.mk - install manual * debian/README.test: explain how package can be tested * debian/doc-base: declare manual to doc-base * debian/copyright: DEP5 * debhelper 9 (control+compat) Added: trunk/packages/R/r-cran-surveillance/trunk/debian/README.test =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/README.test (rev 0) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/README.test 2012-05-31 07:48:05 UTC (rev 11119) @@ -0,0 +1,7 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by loading it into R with the command +‘library(surveillance)’ in order to confirm its integrity. + + -- Andreas Tille <ti...@debian.org> Thu, 31 May 2012 09:25:50 +0200 Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/changelog 2012-05-31 07:39:55 UTC (rev 11118) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/changelog 2012-05-31 07:48:05 UTC (rev 11119) @@ -1,3 +1,20 @@ +r-cran-surveillance (1.2-1-4) UNRELEASED; urgency=low + + * Needs rebuild using latest R to get proper NAMESPACE + * debian/control: + - Standards-Version: 3.9.3 (no changes needed) + - Build-Depends: r-base-dev (>= 2.14.2~20120222) + * debian/rules: + - Remove R:Depends substitution variable which is now + included in /usr/share/R/debian/r-cran.mk + - install manual + * debian/README.test: explain how package can be tested + * debian/doc-base: declare manual to doc-base + * debian/copyright: DEP5 + * debhelper 9 (control+compat) + + -- Andreas Tille <ti...@debian.org> Thu, 31 May 2012 09:25:50 +0200 + r-cran-surveillance (1.2-1-3) unstable; urgency=low * Really applied patch from Sebastian Carneiro Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/compat =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/compat 2012-05-31 07:39:55 UTC (rev 11118) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/compat 2012-05-31 07:48:05 UTC (rev 11119) @@ -1 +1 @@ -8 +9 Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/control =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/control 2012-05-31 07:39:55 UTC (rev 11118) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/control 2012-05-31 07:48:05 UTC (rev 11119) @@ -5,9 +5,9 @@ Uploaders: Andreas Tille <ti...@debian.org>, Sebastian Carneiro <scarne...@speedy.com.ar> DM-Upload-Allowed: yes -Build-Depends: debhelper (>= 8), cdbs, r-base-dev, r-cran-xtable, r-cran-spc, +Build-Depends: debhelper (>= 9), cdbs, r-base-dev (>= 2.14.2~20120222), r-cran-xtable, r-cran-spc, r-cran-maptools, r-cran-vcd, r-cran-msm, r-cran-mass, r-cran-colorspace, r-cran-matrix -Standards-Version: 3.9.2 +Standards-Version: 3.9.3 Homepage: http://surveillance.r-forge.r-project.org Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-surveillance/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-surveillance/trunk/ Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/copyright =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/copyright 2012-05-31 07:39:55 UTC (rev 11118) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/copyright 2012-05-31 07:48:05 UTC (rev 11119) @@ -1,12 +1,17 @@ -Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat -Upstream-Author: Michael Höhle, Michaela Paul -Packaged-By: Andreas Tille <ti...@debian.org> -Packaged-Date: Mon, 24 Nov 2008 13:12:38 +0100 -Upstream-Source: http://surveillance.r-forge.r-project.org/ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Contact: Michael Höhle <hoe...@stat.uni-muenchen.de> +Upstream-Name: surveillance +Source: http://surveillance.r-forge.r-project.org/ Files: * +Copyright: © 2003-2010 Michael Höhle, Michaela Paul License: GPL2+ -Copyright: © 2003-2008 Michael Höhle, Michaela Paul + +Files: debian/* +Copyright: © 2008-2012 Andreas Tille <ti...@debian.org> +License: GPL2+ + +License: GPL2+ This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or @@ -19,10 +24,6 @@ . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. -X-Comment: On Debian systems, the complete text of the GNU Public + . + On Debian systems, the complete text of the GNU Public License can be found in `/usr/share/common-licenses/GPL'. - -Files: debian/* -Copyright: © 2008 Andreas Tille <ti...@debian.org> -License: Same as r-cran-surveillance itelf - (see above) Added: trunk/packages/R/r-cran-surveillance/trunk/debian/doc-base =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/doc-base (rev 0) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/doc-base 2012-05-31 07:48:05 UTC (rev 11119) @@ -0,0 +1,20 @@ +Document: surveillance +Title: Modeling and monitoring discrete response time series +Author: M. Höhle with contributions from T. Correa, M. Hofmann, C. Lang, M. Paul, A. Riebler, S. Steiner and V. Wimmer +Abstract: A package implementing statistical methods for the modeling and change-point detection + in time series of counts, proportions and categorical data. Focus is on outbreak detection in count + data time series originating from public health surveillance of infectious diseases, but + applications could just as well originate from environmetrics, reliability engineering, + econometrics or social sciences. Currently the package contains implementations typical + outbreak detection procedures such as Stroup et. al (1989), Farrington et al, (1996), Rossi et al. + (1999), Rogerson and Yamada (2001), a Bayesian approach, negative binomial CUSUM + methods and a detector based on generalized likelihood ratios. Furthermore, inference methods + for the retrospective infectious disease model in Held et al. (2005), Held et al. (2006) and Paul et + al. (2008) are provided. A novel CUSUM approach combining logistic and multinomial logistic + modelling is also included. The package contains several real-world datasets, the ability to + simulate outbreak data, visualize the results of the monitoring in temporal, spatial or + spatio-temporal fashion. +Section: Science/Biology + +Format: pdf +Files: /usr/share/doc/r-cran-surveillance/manual.pdf Modified: trunk/packages/R/r-cran-surveillance/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-surveillance/trunk/debian/rules 2012-05-31 07:39:55 UTC (rev 11118) +++ trunk/packages/R/r-cran-surveillance/trunk/debian/rules 2012-05-31 07:48:05 UTC (rev 11119) @@ -10,5 +10,4 @@ install/$(package):: chmod 644 debian/$(package)/usr/lib/R/site-library/surveillance/shapes/berlin.* - # Require a number equal or superior than the R version the package was built with. - echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars + cp -a ..pdf debian/$(package)/usr/share/doc/$(package)/manual.pdf _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit