Pierre Gruet pushed to branch master at Debian Med / htsjdk
Commits: 0c5275b1 by Pierre Gruet at 2023-12-01T11:11:26+01:00 New upstream version 4.0.2+dfsg - - - - - 7b628377 by Pierre Gruet at 2023-12-01T11:12:03+01:00 Update upstream source from tag 'upstream/4.0.2+dfsg' Update to upstream version '4.0.2+dfsg' with Debian dir ef4fac6250e82a4d46952420f42906b7ec4351ea - - - - - b7d9fcce by Pierre Gruet at 2023-12-14T09:36:30+01:00 Adding nashorn to maven.ignoreRules - - - - - fff4e3dc by Pierre Gruet at 2023-12-14T09:38:28+01:00 Using mjson instead of unpackaged, non-DFSG-free org.json - - - - - acdd91f9 by Pierre Gruet at 2023-12-14T09:44:55+01:00 Solving ambiguous assertions in the unit tests - - - - - ebadccd8 by Pierre Gruet at 2023-12-14T09:45:17+01:00 Deactivating the tests for VCF 4.4 as this version of htsjdk does not handle them - - - - - bdc3e0cc by Pierre Gruet at 2023-12-14T09:45:29+01:00 Refreshing patches - - - - - 404ae653 by Pierre Gruet at 2023-12-14T09:46:38+01:00 Updating changelog - - - - - 9debcd7e by Pierre Gruet at 2023-12-14T09:50:46+01:00 Forwarding patch - - - - - fd067032 by Pierre Gruet at 2023-12-14T10:11:09+01:00 Adding getDebianVersion definition, deleted by mistake - - - - - 00c7f631 by Pierre Gruet at 2023-12-14T10:11:16+01:00 Refreshing patches - - - - - 23fb7f55 by Pierre Gruet at 2023-12-14T10:11:28+01:00 Upload to unstable - - - - - 30 changed files: - .github/workflows/tests.yml - README.md - build.gradle - debian/changelog - + debian/maven.ignoreRules - debian/maven.rules - debian/patches/10-build.xml.patch - debian/patches/100-fix-java11 - debian/patches/13-skip_network_tests - debian/patches/150-use-rhino-as-JS-engine.patch - + debian/patches/170-use-mjson.patch - + debian/patches/180-ambiguous-assertions.patch - + debian/patches/190-newest-vcf.patch - debian/patches/20-fix-version.patch - debian/patches/30-disable-scalatest.patch - debian/patches/60-enable-tests - debian/patches/90-disable-testftp.patch - debian/patches/92-disable-testhttp.patch - debian/patches/series - src/main/java/htsjdk/beta/io/bundle/BundleJSON.java - src/main/java/htsjdk/samtools/BamFileIoUtils.java - src/main/java/htsjdk/samtools/Defaults.java - src/main/java/htsjdk/samtools/SAMReadGroupRecord.java - src/main/java/htsjdk/samtools/SAMRecord.java - src/main/java/htsjdk/samtools/SAMRecordIterator.java - src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java - src/main/java/htsjdk/samtools/SAMUtils.java - src/main/java/htsjdk/samtools/SamFileValidator.java - src/main/java/htsjdk/samtools/TextTagCodec.java - src/main/java/htsjdk/samtools/cram/structure/Slice.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/1c6d7d612079f339f38df5a92ed15cce1a12fe47...23fb7f554be415c197b50701b6ed589aa483c672 -- View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/1c6d7d612079f339f38df5a92ed15cce1a12fe47...23fb7f554be415c197b50701b6ed589aa483c672 You're receiving this email because of your account on salsa.debian.org.
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