Andreas Tille pushed to branch upstream at Debian Med / q2-demux
Commits: 2e4aaca5 by Andreas Tille at 2024-02-18T14:48:37+01:00 New upstream version 2024.2.0+dfsg - - - - - 5 changed files: - .github/workflows/ci-dev.yaml - README.md - ci/recipe/meta.yaml - q2_demux/_version.py - q2_demux/tests/test_demux.py Changes: ===================================== .github/workflows/ci-dev.yaml ===================================== @@ -9,4 +9,4 @@ jobs: ci: uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml@dev with: - distro: core \ No newline at end of file + distro: amplicon ===================================== README.md ===================================== @@ -1,5 +1,5 @@ # q2-demux -![](https://github.com/qiime2/q2-demux/workflows/ci/badge.svg) +![](https://github.com/qiime2/q2-demux/workflows/ci-dev/badge.svg) This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org. \ No newline at end of file ===================================== ci/recipe/meta.yaml ===================================== @@ -49,7 +49,7 @@ test: - qiime2.plugins.demux commands: - - py.test --pyargs q2_demux + - py.test --pyargs q2_demux about: home: https://qiime2.org ===================================== q2_demux/_version.py ===================================== @@ -23,9 +23,9 @@ def get_keywords(): # setup.py/versioneer.py will grep for the variable names, so they must # each be defined on a line of their own. _version.py will just call # get_keywords(). - git_refnames = " (tag: 2023.9.1, Release-2023.9)" - git_full = "09097f551d09f026b295962441e90b80c0e5ce81" - git_date = "2023-10-24 18:43:25 +0000" + git_refnames = " (tag: 2024.2.0, Release-2024.2)" + git_full = "9e6af01fb0eff039b221f95ee596238f96a3b134" + git_date = "2024-02-16 21:56:22 +0000" keywords = {"refnames": git_refnames, "full": git_full, "date": git_date} return keywords ===================================== q2_demux/tests/test_demux.py ===================================== @@ -19,7 +19,7 @@ import skbio import qiime2 import numpy.testing as npt -from qiime2.plugin.testing import TestPluginBase +from qiime2.plugin.testing import TestPluginBase, assert_no_nans_in_tables from q2_demux._demux import (BarcodeSequenceFastqIterator, BarcodePairedSequenceFastqIterator) from q2_demux import (emp_single, emp_paired, partition_samples_single, @@ -1269,6 +1269,7 @@ class SummarizeTests(TestPluginBase): self.assertTrue(os.path.exists(qual_forward_fp)) self.assertTrue(os.path.getsize(qual_forward_fp) > 0) with open(index_fp, 'r') as fh: + assert_no_nans_in_tables(fh) html = fh.read() self.assertIn('<th>Minimum</th>\n <td>1</td>', html) self.assertIn('<th>Maximum</th>\n <td>3</td>', html) @@ -1305,6 +1306,7 @@ class SummarizeTests(TestPluginBase): png_fp = os.path.join(output_dir, 'demultiplex-summary.png') self.assertFalse(os.path.exists(png_fp)) with open(index_fp, 'r') as fh: + assert_no_nans_in_tables(fh) html = fh.read() self.assertIn('<th>Minimum</th>\n <td>1</td>', html) self.assertIn('<th>Maximum</th>\n <td>1</td>', html) View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/2e4aaca52b167c4b761aa6305d2bda63f789306b -- View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/2e4aaca52b167c4b761aa6305d2bda63f789306b You're receiving this email because of your account on salsa.debian.org.
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