Étienne Mollier pushed to branch master at Debian Med / pyranges
Commits:
51a48f3a by Étienne Mollier at 2024-02-23T08:41:04+01:00
fix-test_unary.patch: new.
This patch fixes a remaining test failure affecting dtype conversion.
- - - - -
1c779261 by Étienne Mollier at 2024-02-23T09:58:29+01:00
d/control: move to pybuild autopkgtest.
This enables non-superficial autopkgtest with minimal implementation.
- - - - -
3 changed files:
- debian/control
- + debian/patches/fix-test_unary.patch
- debian/patches/series
Changes:
=====================================
debian/control
=====================================
@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.
Uploaders: Steffen Moeller <moel...@debian.org>,
Étienne Mollier <emoll...@debian.org>
Section: python
-Testsuite: autopkgtest-pkg-python
+Testsuite: autopkgtest-pkg-pybuild
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
=====================================
debian/patches/fix-test_unary.patch
=====================================
@@ -0,0 +1,22 @@
+Description: fix expected cluster result.
+ Somehow, the statement in its original form ceased to reflect the change of
+ dtype to numpy's int32 for the expected result, causing a test failure because
+ the reference data now has wrongly int64 numpy dtype. Slightly changing the
+ way the assignation of the smaller dtype is done fixes the problem.
+Author: Étienne Mollier <emoll...@debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1044064
+Forwarded: no
+Last-Update: 2024-02-22
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- pyranges.orig/tests/test_unary.py
++++ pyranges/tests/test_unary.py
+@@ -189,7 +189,7 @@
+ new_clusters.append(c)
+
+ expected = pr.concat(new_clusters).df
+- expected.loc[:, "Cluster"] = expected.Cluster.astype(np.int32)
++ expected.Cluster = expected.Cluster.astype(np.int32)
+ # expected = expected.drop_duplicates()
+
+ print(expected)
=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ numpy_1.24.patch
healthcheck-all.patch
no_install_depends_cython.patch
pandas2.0.patch
+fix-test_unary.patch
View it on GitLab:
https://salsa.debian.org/med-team/pyranges/-/compare/c2dfc1e3d2f3c6177638255f129ea814ac789c55...1c779261ec7968ebdbbd5a1e9df133e669d825a0
--
View it on GitLab:
https://salsa.debian.org/med-team/pyranges/-/compare/c2dfc1e3d2f3c6177638255f129ea814ac789c55...1c779261ec7968ebdbbd5a1e9df133e669d825a0
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