Michael R. Crusoe pushed to branch master at Debian Med / prime-phylo
Commits: e409ac42 by Michael R. Crusoe at 2024-04-12T14:16:30+03:00 Apply patch from Zixing Liu @ Canonical to fix FTBFS with GCC 13. Thanks! - - - - - 3 changed files: - debian/changelog - + debian/patches/fix-ftbfs-with-gcc13.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +prime-phylo (1.0.11-11) unstable; urgency=medium + + * Team upload. + * Apply patch from Zixing Liu @ Canonical to fix FTBFS with GCC 13. + Thanks! + + -- Michael R. Crusoe <cru...@debian.org> Fri, 12 Apr 2024 14:16:27 +0300 + prime-phylo (1.0.11-10) unstable; urgency=medium * Team Upload. ===================================== debian/patches/fix-ftbfs-with-gcc13.patch ===================================== @@ -0,0 +1,55 @@ +Description: Fix missing headers and missing prototypes +Author: Zixing Liu <zixing....@canonical.com> +Bug-Ubuntu: https://bugs.launchpad.net/debian/+source/prime-phylo/+bug/2061032 +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066653 +Forwarded: no +Last-Update: 2024-04-11 +Index: prime-phylo/src/cxx/libraries/prime/NHXparse.y +=================================================================== +--- prime-phylo.orig/src/cxx/libraries/prime/NHXparse.y ++++ prime-phylo/src/cxx/libraries/prime/NHXparse.y +@@ -2,6 +2,7 @@ + #include <string.h> + #include <stdio.h> + #include <stdlib.h> ++#include <unistd.h> + #include "NHXnode.h" + #include "NHXtree.h" + #include "NHXannotation.h" +@@ -14,7 +15,9 @@ + /* #define YYERROR_VERBOSE */ + + /* Here comes some C declarations */ +- ++extern int yylex (void); ++extern void read_from_string(char *str); ++extern void close_string_buffer(); + extern FILE *yytree_in; + extern char *yytree_text; + extern unsigned int lineno; /* Current line number in input file */ +Index: prime-phylo/src/cxx/libraries/sfile/gb.y +=================================================================== +--- prime-phylo.orig/src/cxx/libraries/sfile/gb.y ++++ prime-phylo/src/cxx/libraries/sfile/gb.y +@@ -23,7 +23,8 @@ + #include "entry.h" + #include "sfile.h" + +- ++extern int yylex (void); ++unsigned linenumber(); + static int yyerror(); + + #define YYDEBUG 1 +Index: prime-phylo/src/cxx/libraries/sfile/gbread.c +=================================================================== +--- prime-phylo.orig/src/cxx/libraries/sfile/gbread.c ++++ prime-phylo/src/cxx/libraries/sfile/gbread.c +@@ -3,6 +3,7 @@ + + extern int yydebug; + ++#include <string.h> + #include "sfile.h" + #include "gb.tab.h" + ===================================== debian/patches/series ===================================== @@ -3,3 +3,4 @@ fix-ftbfs-with-Boost160.patch fix-gcc-8.patch 0003-Fix-build-with-Boost-1.67.patch 0004-fix-gcc10-build.patch +fix-ftbfs-with-gcc13.patch View it on GitLab: https://salsa.debian.org/med-team/prime-phylo/-/commit/e409ac424018ba7e07705669e131407e7c74576f -- View it on GitLab: https://salsa.debian.org/med-team/prime-phylo/-/commit/e409ac424018ba7e07705669e131407e7c74576f You're receiving this email because of your account on salsa.debian.org.
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