Andreas Tille pushed to branch master at Debian Med / fastaq
Commits: 3e06527d by Andreas Tille at 2024-12-06T21:43:45+01:00 Fix Python3.12 string syntax Closes: #1085573 - - - - - 73ea0252 by Andreas Tille at 2024-12-06T21:45:09+01:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: - debian/changelog - + debian/patches/python3.12-syntax.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,10 @@ +fastaq (3.17.0-9) unstable; urgency=medium + + * Fix Python3.12 string syntax + Closes: #1085573 + + -- Andreas Tille <[email protected]> Fri, 06 Dec 2024 21:44:29 +0100 + fastaq (3.17.0-8) unstable; urgency=medium * Team upload. ===================================== debian/patches/python3.12-syntax.patch ===================================== @@ -0,0 +1,18 @@ +Description: Fix Python3.12 string syntax +Bug-Debian: https://bugs.debian.org/1085573 +Author: Andreas Tille <[email protected]> +Last-Update: 2024-06-06 + +--- a/pyfastaq/sequences.py ++++ b/pyfastaq/sequences.py +@@ -34,8 +34,8 @@ def file_reader(fname, read_quals=False) + '''Iterates over a FASTA or FASTQ file, yielding the next sequence in the file until there are no more sequences''' + f = utils.open_file_read(fname) + line = f.readline() +- phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') +- gbk_regex = re.compile('^LOCUS\s+\S') ++ phylip_regex = re.compile(r'^\s*[0-9]+\s+[0-9]+$') ++ gbk_regex = re.compile(r'^LOCUS\s+\S') + + if line.startswith('>'): + seq = Fasta() ===================================== debian/patches/series ===================================== @@ -1,2 +1,3 @@ tests remove-pkg_resources.patch +python3.12-syntax.patch View it on GitLab: https://salsa.debian.org/med-team/fastaq/-/compare/1eb95b1792d73384cd4422c79c13263caad56eb3...73ea02525ab1a30f66f84bd6592fdf1bd8bfbf83 -- View it on GitLab: https://salsa.debian.org/med-team/fastaq/-/compare/1eb95b1792d73384cd4422c79c13263caad56eb3...73ea02525ab1a30f66f84bd6592fdf1bd8bfbf83 You're receiving this email because of your account on salsa.debian.org.
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