Andreas Tille pushed to branch master at Debian Med / toil
Commits: 508536dd by Andreas Tille at 2024-12-12T11:04:57+01:00 Fix Python3.12 string syntax - - - - - b35adc32 by Andreas Tille at 2024-12-12T11:05:18+01:00 Standards-Version: 4.7.0 (routine-update) - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/python3.12-syntax.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,6 @@ toil (7.0.0-1) UNRELEASED; urgency=medium + [ Michael R. Crusoe ] * New upstream version * Refresh patches * d/patches/allow_newer_requests: added @@ -11,6 +12,11 @@ toil (7.0.0-1) UNRELEASED; urgency=medium * d/rules: skip online tests * d/patches/setting_version.patch: update for Python 3.12 + [ Andreas Tille ] + * Fix Python3.12 string syntax + Closes: #1087116 + * Standards-Version: 4.7.0 (routine-update) + -- Michael R. Crusoe <[email protected]> Mon, 27 May 2024 08:45:55 +0200 toil (6.1.0-4) unstable; urgency=medium ===================================== debian/control ===================================== @@ -31,7 +31,7 @@ Build-Depends: debhelper-compat (= 13), python3-pubsub <!nodoc>, python3-doc <!nodoc>, python3-tz <!nodoc> <!nocheck> -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/toil Vcs-Git: https://salsa.debian.org/med-team/toil.git Homepage: https://github.com/BD2KGenomics/toil ===================================== debian/patches/python3.12-syntax.patch ===================================== @@ -0,0 +1,16 @@ +Description: Fix Python3.12 string syntax +Bug-Debian: https://bugs.debian.org/1087116 +Author: Andreas Tille <[email protected]> +Last-Update: 2024-06-12 + +--- a/src/toil/wdl/wdltoil.py ++++ b/src/toil/wdl/wdltoil.py +@@ -3129,7 +3129,7 @@ def main() -> None: + inputs_search_path = [] + if options.inputs_uri: + inputs_search_path.append(options.inputs_uri) +- match = re.match('https://raw\.githubusercontent\.com/[^/]*/[^/]*/[^/]*/', options.inputs_uri) ++ match = re.match(r'https://raw\.githubusercontent\.com/[^/]*/[^/]*/[^/]*/', options.inputs_uri) + if match: + # Special magic for Github repos to make e.g. + # https://raw.githubusercontent.com/vgteam/vg_wdl/44a03d9664db3f6d041a2f4a69bbc4f65c79533f/params/giraffe.json ===================================== debian/patches/series ===================================== @@ -11,3 +11,4 @@ atomic_copy_as_alternative.patch soften-cwltool-dep.patch accept_debian_packaged_docker_version.patch allow_newer_requests +python3.12-syntax.patch View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/26e4087ef6787c28061336c77ed51ac6b36d36ce...b35adc32e07d3f1cd8abadf043611edb22ca0977 -- View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/26e4087ef6787c28061336c77ed51ac6b36d36ce...b35adc32e07d3f1cd8abadf043611edb22ca0977 You're receiving this email because of your account on salsa.debian.org.
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