Andreas Tille pushed to branch master at Debian Med / berkeley-express
Commits: 7d293003 by Andreas Tille at 2025-10-16T10:23:22+02:00 d/watch: version=5 - - - - - b567a91f by Andreas Tille at 2025-10-16T10:26:47+02:00 Fix build with CMake 4 Closes: #1112724 - - - - - cfdef703 by Andreas Tille at 2025-10-16T10:26:58+02:00 Standards-Version: 4.7.2 (routine-update) - - - - - ad9e297c by Andreas Tille at 2025-10-16T10:31:32+02:00 debputy lint --auto-fix (routine-update) - - - - - de97848b by Andreas Tille at 2025-10-16T10:33:23+02:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - debian/rules - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,14 @@ +berkeley-express (1.5.3+dfsg-4) unstable; urgency=medium + + * Team upload. + * d/watch: version=5 + * Fix build with CMake 4 + Closes: #1112724 + * Standards-Version: 4.7.2 (routine-update) + * debputy lint --auto-fix (routine-update) + + -- Andreas Tille <[email protected]> Thu, 16 Oct 2025 10:31:34 +0200 + berkeley-express (1.5.3+dfsg-3) unstable; urgency=medium * Team upload. ===================================== debian/control ===================================== @@ -1,21 +1,23 @@ Source: berkeley-express +Standards-Version: 4.7.2 Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Michael R. Crusoe <[email protected]> +Uploaders: + Michael R. Crusoe <[email protected]>, Section: science Priority: optional -Build-Depends: debhelper-compat (= 13), - libboost-thread-dev, - libboost-system-dev, - libboost-filesystem-dev, - libboost-program-options-dev, - libboost-date-time-dev, - libbamtools-dev, - libboost-tools-dev, - libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el], - cmake, - libprotobuf-dev, - protobuf-compiler -Standards-Version: 4.6.1 +Build-Depends: + debhelper-compat (= 13), + libboost-thread-dev, + libboost-system-dev, + libboost-filesystem-dev, + libboost-program-options-dev, + libboost-date-time-dev, + libbamtools-dev, + libboost-tools-dev, + libgoogle-perftools-dev [amd64 arm64 armel armhf i386 powerpc ppc64el], + cmake, + libprotobuf-dev, + protobuf-compiler, Vcs-Browser: https://salsa.debian.org/med-team/berkeley-express Vcs-Git: https://salsa.debian.org/med-team/berkeley-express.git Homepage: http://bio.math.berkeley.edu/eXpress/index.html @@ -23,9 +25,11 @@ Rules-Requires-Root: no Package: berkeley-express Architecture: any -Depends: ${shlibs:Depends}, - ${misc:Depends} -Recommends: med-config +Depends: + ${shlibs:Depends}, + ${misc:Depends}, +Recommends: + med-config, Description: Streaming quantification for high-throughput sequencing eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include @@ -71,7 +75,8 @@ Package: berkeley-express-doc Architecture: all Multi-Arch: foreign Section: doc -Depends: ${misc:Depends} +Depends: + ${misc:Depends}, Description: Documentation for RNA-Seq tool eXpress This package provides a PDF with the documentation for eXpress. . ===================================== debian/rules ===================================== @@ -9,6 +9,8 @@ DH_VERBOSE := 1 %: dh $@ +override_dh_auto_configure: + dh_auto_configure -- -DCMAKE_POLICY_VERSION_MINIMUM=3.5 override_dh_compress: dh_compress --exclude=express-doc.pdf ===================================== debian/watch ===================================== @@ -1,4 +1,7 @@ -version=4 +Version: 5 -opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ - https://github.com/adarob/eXpress/tags .*/@ANY_VERSION@@ARCHIVE_EXT@ +Template: Github +Owner: adarob +Project: eXpress +Repack-Suffix: +dfsg +Dversion-Mangle: auto View it on GitLab: https://salsa.debian.org/med-team/berkeley-express/-/compare/d7c2df5df8e40beb6f5bdcc53edc97e1a36c6a17...de97848bf31661e9455312a35c252d97aa54c1a8 -- View it on GitLab: https://salsa.debian.org/med-team/berkeley-express/-/compare/d7c2df5df8e40beb6f5bdcc53edc97e1a36c6a17...de97848bf31661e9455312a35c252d97aa54c1a8 You're receiving this email because of your account on salsa.debian.org.
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