Andreas Tille pushed to branch master at Debian Med / genometester
Commits:
ea15009d by Andreas Tille at 2025-12-11T22:10:28+01:00
Complite patch for changed upstream source
- - - - -
1 changed file:
- debian/patches/cross.patch
Changes:
=====================================
debian/patches/cross.patch
=====================================
@@ -29,39 +29,39 @@ Description: Fix C vs C++ confusion by rather calling CC
for C code
glistmaker: $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistmaker $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistmaker $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(LISTMAKER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistmaker $(LIBS) $(CFLAGS) $(AZ_FLAGS)
glistquery: $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistquery $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistquery $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(LISTQUERY_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistquery $(LIBS) $(CFLAGS) $(AZ_FLAGS)
glistcompare: $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistcompare $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistcompare $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(LISTCOMPARE_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
glistcompare $(LIBS) $(CFLAGS) $(AZ_FLAGS)
gindexer: $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer
$(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer
$(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(GINDEXER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o gindexer
$(LIBS) $(CFLAGS) $(AZ_FLAGS)
gmer_counter: $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gmer_counter $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gmer_counter $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(GMER_COUNTER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gmer_counter $(LIBS) $(CFLAGS) $(AZ_FLAGS)
gmer_caller: $(GMER_CALLER_SOURCES)
- $(CXX) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CXXFLAGS) -Wall
-+ $(CC) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CXXFLAGS) -Wall
++ $(CC) $(GMER_CALLER_SOURCES) -o gmer_caller $(LIBS) $(CFLAGS) -Wall
gassembler: $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES)
- $(CXX) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gassembler $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
-+ $(CC) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gassembler $(LIBS) $(CXXFLAGS) $(AZ_FLAGS)
++ $(CC) $(GASSEMBLER_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
gassembler $(LIBS) $(CFLAGS) $(AZ_FLAGS)
aleq: $(ALEQ_SOURCES)
- $(CXX) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CXXFLAGS) -Wall
-+ $(CC) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CXXFLAGS) -Wall
++ $(CC) $(ALEQ_SOURCES) -o aleq $(LIBS) $(CFLAGS) -Wall
kmer_predictor: $(KMER_PREDICTOR_SOURCES)
- $(CXX) $(KMER_PREDICTOR_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
kmer_predictor $(LIBS) $(AZ_FLAGS) $(CXXFLAGS)
-+ $(CC) $(KMER_PREDICTOR_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
kmer_predictor $(LIBS) $(AZ_FLAGS) $(CXXFLAGS)
++ $(CC) $(KMER_PREDICTOR_SOURCES) $(AZ_SOURCES) $(ARIKKEI_SOURCES) -o
kmer_predictor $(LIBS) $(AZ_FLAGS) $(CFLAGS)
clean: clean-custom
rm -f *.o $(BINS)
View it on GitLab:
https://salsa.debian.org/med-team/genometester/-/commit/ea15009de4b175e1ae37943a0e82121af390a211
--
View it on GitLab:
https://salsa.debian.org/med-team/genometester/-/commit/ea15009de4b175e1ae37943a0e82121af390a211
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