Andreas Tille pushed to branch master at Debian Med / libsbml
Commits: 30fec645 by Andreas Tille at 2025-12-13T11:34:54+01:00 New upstream version - - - - - afbda43b by Andreas Tille at 2025-12-13T11:34:56+01:00 New upstream version 5.20.5+dfsg - - - - - de66768b by Andreas Tille at 2025-12-13T11:35:11+01:00 Update upstream source from tag 'upstream/5.20.5+dfsg' Update to upstream version '5.20.5+dfsg' with Debian dir e4cb5e905200572d9b313ccd90a2fdc00bfe3457 - - - - - e2dff4a3 by Andreas Tille at 2025-12-13T11:35:12+01:00 Standards-Version: 4.7.2 (routine-update) - - - - - 51e64a6e by Andreas Tille at 2025-12-13T11:35:33+01:00 Use secure URI in Homepage field. Changes-By: lintian-brush Fixes: lintian: homepage-field-uses-insecure-uri See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html - - - - - 247c4fea by Andreas Tille at 2025-12-13T11:38:35+01:00 Drop patch applied upstream - - - - - c7bdfb13 by Andreas Tille at 2025-12-13T11:38:59+01:00 Fix formatting - - - - - 77c7b30e by Andreas Tille at 2025-12-13T15:23:49+01:00 Fix build using gcc-15 - - - - - 7ebcf239 by Andreas Tille at 2025-12-13T15:24:07+01:00 Fix doc creation - - - - - f631bad1 by Andreas Tille at 2025-12-13T17:12:07+01:00 Upload to unstable - - - - - 187 changed files: - .github/workflows/brief.yml - .github/workflows/doxygen.yml - .github/workflows/extensive.yml - .github/workflows/matlab.yml - .github/workflows/octave.yml - .github/workflows/store-artefact.yml - CMakeLists.txt - CMakeModules/FindEXPAT.cmake - CMakeModules/FindZLIB.cmake - VERSION.txt - artefacts.md - config/java.m4 - configure - configure.ac - debian/changelog - debian/control - − debian/patches/fix_build_issue.patch - + debian/patches/gcc-15.patch - debian/patches/series - debian/rules - dev/utilities/sboTree/SBO.cpp.cmake - dev/utilities/sboTree/updateSBO.cmake - examples/c++/CMakeLists.txt - + examples/c++/inferReactions.cpp - src/CMakeLists.txt - src/bindings/python/local.i - src/bindings/swig/libsbml.h - src/bindings/swig/libsbml.i - src/bindings/swig/swigdoc.py - src/sbml/Constraint.cpp - src/sbml/Constraint.h - src/sbml/SBMLDocument.cpp - src/sbml/SBMLDocument.h - src/sbml/SBMLError.cpp - src/sbml/SBMLError.h - src/sbml/SBMLErrorTable.h - src/sbml/SBMLTransforms.cpp - src/sbml/SBO.cpp - src/sbml/SBase.cpp - src/sbml/SBase.h - src/sbml/common/libsbml-version.h - src/sbml/conversion/SBMLRateRuleConverter.cpp - src/sbml/conversion/test/TestSBMLRateRuleConverter.cpp - src/sbml/extension/test/TestSBMLDocumentPlugin.cpp - + src/sbml/extension/test/test-data/issue417.xml - + src/sbml/html2md/COPYING - + src/sbml/html2md/README.md - + src/sbml/html2md/VERSION.txt - + src/sbml/html2md/html2md.cpp - + src/sbml/html2md/html2md.h - + src/sbml/html2md/table.cpp - + src/sbml/html2md/table.h - + src/sbml/maddy/CMakeLists.txt - + src/sbml/maddy/LICENSE - + src/sbml/maddy/VERSION.txt - + src/sbml/maddy/blockparser.h - + src/sbml/maddy/breaklineparser.h - + src/sbml/maddy/checklistparser.h - + src/sbml/maddy/codeblockparser.h - + src/sbml/maddy/emphasizedparser.h - + src/sbml/maddy/headlineparser.h - + src/sbml/maddy/horizontallineparser.h - + src/sbml/maddy/htmlparser.h - + src/sbml/maddy/imageparser.h - + src/sbml/maddy/inlinecodeparser.h - + src/sbml/maddy/italicparser.h - + src/sbml/maddy/latexblockparser.h - + src/sbml/maddy/lineparser.h - + src/sbml/maddy/linkparser.h - + src/sbml/maddy/orderedlistparser.h - + src/sbml/maddy/paragraphparser.h - + src/sbml/maddy/parser.h - + src/sbml/maddy/parserconfig.h - + src/sbml/maddy/quoteparser.h - + src/sbml/maddy/strikethroughparser.h - + src/sbml/maddy/strongparser.h - + src/sbml/maddy/tableparser.h - + src/sbml/maddy/unorderedlistparser.h - src/sbml/packages/distrib/extension/DistribASTPlugin.cpp - src/sbml/packages/distrib/extension/DistribSBMLDocumentPlugin.cpp - src/sbml/packages/distrib/util/AnnotationToDistribConverter.cpp - src/sbml/packages/distrib/util/DistribToAnnotationConverter.cpp - src/sbml/packages/distrib/util/DistribToAnnotationConverter.h - src/sbml/packages/distrib/util/test/TestDistribAnnotationConverter.cpp - + src/sbml/packages/distrib/util/test/test-data/normal_l3v1_annot_uncertml.xml - + src/sbml/packages/distrib/validator/DistribMathMLConsistencyValidator.cpp - + src/sbml/packages/distrib/validator/DistribMathMLConsistencyValidator.h - src/sbml/packages/distrib/validator/DistribSBMLError.h - src/sbml/packages/distrib/validator/DistribSBMLErrorTable.h - + src/sbml/packages/distrib/validator/DistribUnitConsistencyValidator.cpp - + src/sbml/packages/distrib/validator/DistribUnitConsistencyValidator.h - src/sbml/packages/distrib/validator/DistribValidator.cpp - + src/sbml/packages/distrib/validator/constraints/DistribArgumentsUnitsCheck.cpp - + src/sbml/packages/distrib/validator/constraints/DistribArgumentsUnitsCheck.h - + src/sbml/packages/distrib/validator/constraints/DistribMathMLConsistencyConstraints.cpp - + src/sbml/packages/distrib/validator/constraints/DistribMathMLConsistencyConstraintsDeclared.cxx - + src/sbml/packages/distrib/validator/constraints/DistribNumberArgsMathCheck.cpp - + src/sbml/packages/distrib/validator/constraints/DistribNumberArgsMathCheck.h - + src/sbml/packages/distrib/validator/constraints/DistribUnitConsistencyConstraints.cpp - + src/sbml/packages/distrib/validator/constraints/DistribUnitConsistencyConstraintsDeclared.cxx - src/sbml/packages/distrib/validator/test/TestDistribConsistencyValidator.cpp - src/sbml/packages/distrib/validator/test/TestFile.cpp - src/sbml/packages/distrib/validator/test/TestValidator.cpp - + src/sbml/packages/distrib/validator/test/test-data/distrib-unit-constraints/1510501-fail-01-01.xml - + src/sbml/packages/distrib/validator/test/test-data/distrib-unit-constraints/1510501-fail-01-02.xml - + src/sbml/packages/distrib/validator/test/test-data/distrib-unit-constraints/1510501-fail-01-03.xml - + src/sbml/packages/distrib/validator/test/test-data/distrib-unit-constraints/1510501-pass-00-01.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-01.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-02.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-03.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-04.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-05.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-06.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-07.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-08.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-09.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-10.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-11.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-12.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-13.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-14.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-15.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-fail-01-16.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-01.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-02.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-03.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-04.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-05.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-06.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-07.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-08.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-09.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-10.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-11.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-12.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-13.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-14.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-15.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-16.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-17.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-18.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-19.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-20.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-21.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-22.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-23.xml - + src/sbml/packages/distrib/validator/test/test-data/math-constraints/1510210-pass-00-24.xml - + src/sbml/packages/distrib/validator/test/test-data/unit-constraints/1510523-fail-01-01.xml - + src/sbml/packages/distrib/validator/test/test-data/unit-constraints/1510523-fail-01-02.xml - + src/sbml/packages/distrib/validator/test/test-data/unit-constraints/1510523-pass-00-01.xml - + src/sbml/packages/distrib/validator/validator/QualMathConsistencyValidator.cpp - + src/sbml/packages/distrib/validator/validator/QualMathConsistencyValidator.h - src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp - src/sbml/packages/fbc/extension/test/test-data/fbc_example2_v3.xml - src/sbml/packages/fbc/sbml/KeyValuePair.cpp - src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp - src/sbml/packages/layout/sbml/Layout.cpp - src/sbml/packages/multi/validator/test/test-data/general-constraints/7020306-fail-01-01-10102.xml → src/sbml/packages/multi/validator/test/test-data/general-constraints/7020306-fail-01-01.xml - src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp - src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp - src/sbml/packages/render/sbml/RenderCurve.cpp - src/sbml/packages/render/sbml/Style.cpp - src/sbml/packages/render/sbml/Transformation2D.cpp - + src/sbml/packages/render/validator/test/test-data/general-constraints/1322104-pass-00-01.xml - src/sbml/test/TestConsistencyChecks.cpp - src/sbml/test/TestConstraint.c - src/sbml/test/TestSBase.cpp - src/sbml/util/test/TestUtil.c - src/sbml/util/util.cpp - src/sbml/util/util.h - src/sbml/validator/SBMLInternalValidator.cpp - src/sbml/validator/Validator.cpp - src/sbml/validator/constraints/MathMLBase.cpp - src/sbml/validator/constraints/NumberArgsMathCheck.cpp - src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-04-10102.xml → src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-06.xml - src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-06-10102.xml → src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-07.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-27-20517.xml → src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-08.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-29-20517.xml → src/sbml/validator/test/test-data/libsbml-constraints/99107-fail-01-09.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-28-20517.xml → src/sbml/validator/test/test-data/libsbml-constraints/99108-fail-01-06.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-30-20517.xml → src/sbml/validator/test/test-data/sbml-general-consistency-constraints/20517-fail-01-07.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-32-20517.xml → src/sbml/validator/test/test-data/sbml-general-consistency-constraints/20517-fail-01-08.xml - src/sbml/validator/test/test-data/sbml-xml-constraints/10102-fail-01-31-20517.xml → src/sbml/validator/test/test-data/sbml-general-consistency-constraints/20517-fail-01-09.xml - src/sbml/xml/XMLAttributes.cpp - src/sbml/xml/XMLAttributes.h - src/sbml/xml/XMLNode.cpp - src/sbml/xml/XMLNode.h - src/sbml/xml/test/TestXMLNode.cpp The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/c98b763663d80cdbab119899b8fe489ed3d20e34...f631bad18512454fdb59b6af6d363aa234a15df1 -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/c98b763663d80cdbab119899b8fe489ed3d20e34...f631bad18512454fdb59b6af6d363aa234a15df1 You're receiving this email because of your account on salsa.debian.org.
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