Karsten Schöke pushed to branch upstream at Debian Med / python-biopython
Commits: b51fc0d6 by Karsten Schöke at 2026-05-13T06:43:31+02:00 New upstream version 1.87+dfsg - - - - - 147 changed files: - .circleci/config.yml - .flake8 - .github/workflows/ci.yml - .gitignore - .pre-commit-config.yaml - Bio/Align/AlignInfo.py - Bio/Align/__init__.py - Bio/Align/chain.py - Bio/AlignIO/MauveIO.py - Bio/AlignIO/__init__.py - Bio/Blast/NCBIXML.py - Bio/Blast/_parser.py - Bio/Blast/_writers.py - Bio/Cluster/__init__.py - Bio/Entrez/DTDs/einfo.dtd - + Bio/Entrez/DTDs/pubmed_230101.dtd - + Bio/Entrez/DTDs/pubmed_240101.dtd - + Bio/Entrez/DTDs/pubmed_250101.dtd - Bio/Entrez/Parser.py - Bio/Entrez/__init__.py - Bio/ExPASy/ScanProsite.py - Bio/Nexus/Trees.py - Bio/PDB/MMCIFParser.py - Bio/PDB/PDBIO.py - Bio/PDB/PDBList.py - Bio/PDB/PSEA.py - Bio/PDB/StructureAlignment.py - Bio/PDB/internal_coords.py - Bio/PDB/vectors.py - Bio/Phylo/BaseTree.py - Bio/Phylo/NeXMLIO.py - Bio/SCOP/__init__.py - Bio/SearchIO/HmmerIO/hmmer3_text.py - Bio/SearchIO/InfernalIO/__init__.py - Bio/SearchIO/InfernalIO/_base.py - Bio/SearchIO/_utils.py - Bio/Seq.py - Bio/SeqIO/FastaIO.py - Bio/SeqIO/InsdcIO.py - Bio/SeqIO/Interfaces.py - Bio/SeqIO/PhdIO.py - Bio/SeqIO/SnapGeneIO.py - Bio/SeqIO/UniprotIO.py - Bio/SeqIO/__init__.py - Bio/SeqRecord.py - Bio/SeqUtils/ProtParam.py - Bio/__init__.py - Bio/codonalign/__init__.py - Bio/codonalign/codonalignment.py - Bio/motifs/__init__.py - Bio/motifs/meme.py - BioSQL/BioSeq.py - CONTRIB.rst - CONTRIBUTING.rst - DEPRECATED.rst - Doc/Tutorial/chapter_contributing.rst - Doc/Tutorial/chapter_entrez.rst - Doc/Tutorial/chapter_introduction.rst - Doc/Tutorial/chapter_testing.rst - Doc/biopdb_faq.tex - LICENSE.rst - MANIFEST.in - NEWS.rst - README.rst - − Tests/Entrez/egquery1.xml - − Tests/Entrez/egquery2.xml - Tests/Entrez/einfo1.xml - Tests/Entrez/einfo2.xml - − Tests/Entrez/einfo3.xml - Tests/Entrez/einfo4.xml - Tests/Entrez/elink1.xml - Tests/Entrez/elink2.xml - Tests/Entrez/elink3.xml - Tests/Entrez/elink4.xml - Tests/Entrez/elink5.xml - Tests/Entrez/elink6.xml - Tests/Entrez/elink7.xml - Tests/Entrez/elink8.xml - Tests/Entrez/epost1.xml - Tests/Entrez/epost2.xml - Tests/Entrez/epost3.xml - Tests/Entrez/esearch1.xml - Tests/Entrez/esearch2.xml - Tests/Entrez/esearch3.xml - − Tests/Entrez/esearch4.xml - Tests/Entrez/esearch5.xml - Tests/Entrez/esearch6.xml - Tests/Entrez/esearch7.xml - Tests/Entrez/esearch8.xml - Tests/Entrez/espell.xml - Tests/Entrez/esummary1.xml - − Tests/Entrez/esummary2.xml - Tests/Entrez/esummary3.xml - Tests/Entrez/esummary4.xml - Tests/Entrez/esummary5.xml - Tests/Entrez/esummary6.xml - − Tests/Entrez/esummary7.xml - Tests/Entrez/esummary8.xml - − Tests/Entrez/ncbi_mim.xml - Tests/Entrez/nucleotide1.xml - Tests/Entrez/nucleotide2.xml - Tests/Entrez/protein.xml - Tests/Entrez/pubmed1.xml - Tests/Entrez/pubmed2.xml - Tests/Entrez/taxonomy.xml - + Tests/ExPASy/scanprosite_response.xml - + Tests/SnapGene/linebreak_in_qualifier_text.dna - + Tests/SnapGene/looped_feature.dna - + Tests/SnapGene/looped_feature_origin.dna - Tests/pairwise2_testCases.py - Tests/test_AlignIO.py - Tests/test_AlignIO_ClustalIO.py - Tests/test_AlignIO_EmbossIO.py - Tests/test_AlignIO_FastaIO.py - Tests/test_AlignIO_MauveIO.py - Tests/test_AlignIO_PhylipIO.py - Tests/test_AlignIO_convert.py - Tests/test_Align_format_matrix.py - Tests/test_Align_msf.py - Tests/test_Entrez.py - Tests/test_Entrez_parser.py - Tests/test_ExPASy.py - + Tests/test_ExPASy_offline.py - Tests/test_File.py - Tests/test_NCBIXML.py - Tests/test_PDB_PDBIO.py - Tests/test_PDB_PSEA.py - Tests/test_PDB_SMCRA.py - Tests/test_PDB_StructureAlignment.py - Tests/test_PDB_vectors.py - Tests/test_Phylo.py - Tests/test_PhyloXML.py - Tests/test_Phylo_matplotlib.py - Tests/test_ProtParam.py - Tests/test_SearchIO_blast_xml.py - Tests/test_SearchIO_infernal_text_index.py - Tests/test_SeqIO.py - Tests/test_SeqIO_FastaIO.py - Tests/test_SeqIO_QualityIO.py - Tests/test_SeqIO_SnapGene.py - Tests/test_SeqIO_UniprotIO.py - Tests/test_SeqIO_features.py - Tests/test_Tutorial.py - Tests/test_UniGene.py - Tests/test_UniProt_GOA.py - + pyproject.toml - setup.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/commit/b51fc0d69e6e9fb798d020b7bcb9f25329861cdd -- View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/commit/b51fc0d69e6e9fb798d020b7bcb9f25329861cdd You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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