Andreas Tille pushed to branch master at Debian Med / python-cobra
Commits: 67e866a1 by Andreas Tille at 2026-06-02T16:51:54+02:00 Fix infinite recursion and GPR deepcopy failures on Python 3.14 Closes: #1138218 - - - - - 11b3ccf7 by Andreas Tille at 2026-06-02T16:52:58+02:00 DEP3 - - - - - 3bd1dd72 by Andreas Tille at 2026-06-02T16:53:09+02:00 New upstream version 0.31.1 - - - - - 9eac8573 by Andreas Tille at 2026-06-02T16:53:09+02:00 New upstream version - - - - - 46af0d55 by Andreas Tille at 2026-06-02T16:53:20+02:00 Update upstream source from tag 'upstream/0.31.1' Update to upstream version '0.31.1' with Debian dir 735d6e4fe81697c6445ce725c808dfaae2b802f6 - - - - - 41874625 by Andreas Tille at 2026-06-02T16:53:20+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 96436da0 by Andreas Tille at 2026-06-02T16:53:24+02:00 Changes made by cme - - - - - efdfff29 by Andreas Tille at 2026-06-02T17:11:46+02:00 Rebase patches to new upstream version - - - - - 767c3ac4 by Andreas Tille at 2026-06-02T17:26:08+02:00 Drop alien lintiantag python-package-depends-on-package-from-other-python-variant - - - - - 854e078f by Andreas Tille at 2026-06-02T17:27:00+02:00 Drop unknown architecture powerpcspe - - - - - 40c82eab by Andreas Tille at 2026-06-02T17:28:12+02:00 Build-Depends: pybuild-plugin-pyproject - - - - - a942e2d9 by Andreas Tille at 2026-06-02T17:36:02+02:00 Upload to unstable - - - - - 59 changed files: - .editorconfig - .github/CONTRIBUTING.rst - .github/workflows/cron.yml - .github/workflows/main.yml - .github/workflows/release.yml - + .github/workflows/safety.yml - .github/workflows/test.yml - + .pre-commit-config.yaml - .readthedocs.yaml - README.rst - debian/changelog - debian/control - − debian/patches/a2b9d00a04b85b8c8eb12e4deba29ce2147896cf.patch - debian/patches/ignore_tests.patch - debian/patches/no_future_dependency.patch - − debian/patches/pr1452.patch - + debian/patches/python-314.patch - debian/patches/remove-appdirs.patch - debian/patches/series - − debian/python3-cobra.lintian-overrides - documentation_builder/conf.py - documentation_builder/requirements.txt - + release-notes/0.30.0.md - + release-notes/0.31.0.md - + release-notes/0.31.1.md - release-notes/next-release.md - setup.cfg - setup.py - src/cobra/__init__.py - src/cobra/core/dictlist.py - src/cobra/core/gene.py - src/cobra/core/model.py - src/cobra/core/reaction.py - src/cobra/flux_analysis/__init__.py - + src/cobra/flux_analysis/fast_snp.py - src/cobra/flux_analysis/fastcc.py - + src/cobra/flux_analysis/find_cyclic_reactions.py - src/cobra/flux_analysis/loopless.py - src/cobra/flux_analysis/variability.py - src/cobra/io/dict.py - src/cobra/io/web/biomodels_repository.py - src/cobra/io/web/cobrapy_repository.py - src/cobra/io/web/load.py - src/cobra/sampling/hr_sampler.py - src/cobra/util/__init__.py - tests/conftest.py - tests/data/update_pickles.py - tests/test_core/test_core_reaction.py - tests/test_core/test_gpr.py - tests/test_core/test_solution.py - + tests/test_flux_analysis/test_fast_snp.py - tests/test_flux_analysis/test_fastcc.py - + tests/test_flux_analysis/test_find_cyclic_reactions.py - tests/test_flux_analysis/test_loopless.py - tests/test_flux_analysis/test_variability.py - tests/test_io/test_json.py - tests/test_io/test_web/test_load.py - tests/test_util/test_solver.py - tox.ini The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/compare/1b9f4b64e5a1c0e70c95237a67a4af45a6d001d0...a942e2d98388f8cd9679e01b4ed5bbe2e3223330 -- View it on GitLab: https://salsa.debian.org/med-team/python-cobra/-/compare/1b9f4b64e5a1c0e70c95237a67a4af45a6d001d0...a942e2d98388f8cd9679e01b4ed5bbe2e3223330 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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