Étienne Mollier pushed to branch master at Debian Med / iva
Commits: 8ab06024 by Étienne Mollier at 2026-07-17T21:57:28+02:00 d/control: iva-examples Breaks+Replaces older iva. Closes: #1141776 - - - - - cc7004bf by Étienne Mollier at 2026-07-17T22:04:14+02:00 d/t/control: drop deprecated skip-not-installable. - - - - - 6376421e by Étienne Mollier at 2026-07-17T22:11:00+02:00 d/t/control: reduce test coverage to !32-bit platforms. - - - - - 3d5eabe3 by Étienne Mollier at 2026-07-17T22:12:30+02:00 d/changelog: ready for upload to unstable. - - - - - 3 changed files: - debian/changelog - debian/control - debian/tests/control Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,17 @@ +iva (1.0.11+ds-8) unstable; urgency=medium + + * Team upload. + + [ Andreas Tille ] + * Forward patches + + [ Étienne Mollier ] + * d/control: iva-examples Breaks+Replaces older iva. (Closes: #1141776) + * d/t/control: drop deprecated skip-not-installable. + * d/t/control: reduce test coverage to !32-bit platforms. + + -- Étienne Mollier <[email protected]> Fri, 17 Jul 2026 22:11:53 +0200 + iva (1.0.11+ds-7) unstable; urgency=medium [ Sascha Steinbiss ] ===================================== debian/control ===================================== @@ -67,6 +67,8 @@ Depends: ${misc:Depends}, Suggests: iva +Breaks: iva (<< 1.0.11+ds-7~) +Replaces: iva (<< 1.0.11+ds-7~) Description: iterative virus sequence assembler - test data IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, ===================================== debian/tests/control ===================================== @@ -1,4 +1,13 @@ Tests: run-unit-test Depends: @, trimmomatic, python3-packaging -Restrictions: skip-not-installable, allow-stderr -# Currently kmc is only available for amd64 +Restrictions: allow-stderr +Architecture: !armhf !i386 +# FIXME: run_kmc.sh looks inoperative on 32-bit platforms: +# +# + /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out +# The following command failed with exit code 1 +# bash run_kmc.sh +# +# The output was: +# +# Error: std::bad_alloc View it on GitLab: https://salsa.debian.org/med-team/iva/-/compare/2160b03c3c92f5e0612bbeacda804597a74cc696...3d5eabe366f8fc07c7c95e7481dfda10155ef8d5 -- View it on GitLab: https://salsa.debian.org/med-team/iva/-/compare/2160b03c3c92f5e0612bbeacda804597a74cc696...3d5eabe366f8fc07c7c95e7481dfda10155ef8d5 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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