Author: sascha-guest Date: 2013-02-05 18:13:50 +0000 (Tue, 05 Feb 2013) New Revision: 12914
Modified: trunk/packages/genometools/trunk/debian/changelog trunk/packages/genometools/trunk/debian/patches/adding_soname trunk/packages/genometools/trunk/debian/patches/libbam-fix Log: New upstream release 1.5.0 Modified: trunk/packages/genometools/trunk/debian/changelog =================================================================== --- trunk/packages/genometools/trunk/debian/changelog 2013-02-05 09:23:24 UTC (rev 12913) +++ trunk/packages/genometools/trunk/debian/changelog 2013-02-05 18:13:50 UTC (rev 12914) @@ -1,3 +1,23 @@ +genometools (1.5.0-1) unstable; urgency=low + + * New upstream release + * bugfixes and cleanups + * development tool `gt sain' added to run an induced suffix array sorting + algorithm + * the -typecheck option in the `gt gff3` and `gt gff3validator` tools + now also validates parent (part-of) relationships, see -help output for + details + * new option -encseq besides -seqfile(s) and -regionmapping to select a + encseq index as a sequence source + * GtBioseq backend switched to GtEncseq + * GtSeqCol is now an interface, GtEncseqCol added + * GtRankedList added + * GtSNPAnnotatorStream and `gt snpper' tool added + * node sorting code is now aware of MD5 hash presence + * compatibility with old Pango versions inproved + + -- Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> Tue, 05 Feb 2013 18:52:22 +0100 + genometools (1.4.2-4) unstable; urgency=low * Remove shlibs.local file Modified: trunk/packages/genometools/trunk/debian/patches/adding_soname =================================================================== --- trunk/packages/genometools/trunk/debian/patches/adding_soname 2013-02-05 09:23:24 UTC (rev 12913) +++ trunk/packages/genometools/trunk/debian/patches/adding_soname 2013-02-05 18:13:50 UTC (rev 12914) @@ -1,6 +1,6 @@ --- a/Makefile +++ b/Makefile -@@ -86,6 +86,7 @@ +@@ -96,6 +96,7 @@ SHARED_OBJ_NAME_EXT:=.so SHARED:=-shared endif @@ -8,7 +8,7 @@ # compiled executables GTMAIN_SRC:=src/gt.c src/gtr.c src/gtt.c src/interactive.c -@@ -238,7 +239,7 @@ +@@ -249,7 +250,7 @@ # add necessary shared lib dependencies then not building them ourselves ifeq ($(useshared),yes) @@ -17,7 +17,7 @@ -llua5.1-filesystem -llua5.1-des56 -lbam else DEPLIBS:= -@@ -517,7 +518,7 @@ +@@ -532,7 +533,7 @@ ifdef DESTDIR prefix:=$(DESTDIR)$(prefix) @@ -26,7 +26,7 @@ # allow to set patch program patch ?= patch -@@ -595,8 +596,9 @@ +@@ -610,8 +611,9 @@ $(ADDITIONAL_ZLIBS) @echo "[link $(@F)]" @test -d $(@D) || mkdir -p $(@D) @@ -38,7 +38,7 @@ lib/libtecla.a: $(LIBTECLA_OBJ) @echo "[link $(@F)]" -@@ -934,7 +936,8 @@ +@@ -950,7 +952,8 @@ ifdef RANLIB $(RANLIB) $(prefix)/lib/libgenometools.a endif Modified: trunk/packages/genometools/trunk/debian/patches/libbam-fix =================================================================== --- trunk/packages/genometools/trunk/debian/patches/libbam-fix 2013-02-05 09:23:24 UTC (rev 12913) +++ trunk/packages/genometools/trunk/debian/patches/libbam-fix 2013-02-05 18:13:50 UTC (rev 12914) @@ -1,6 +1,6 @@ --- a/Makefile +++ b/Makefile -@@ -240,7 +240,7 @@ +@@ -251,7 +251,7 @@ # add necessary shared lib dependencies then not building them ourselves ifeq ($(useshared),yes) DEPLIBS:=-lm -lbz2 -lz -lexpat -llua5.1-lpeg -llua5.1 -llua5.1-md5 \ @@ -9,7 +9,7 @@ else DEPLIBS:= endif -@@ -576,6 +576,10 @@ +@@ -591,6 +591,10 @@ @$(RANLIB) $@ endif @@ -20,7 +20,7 @@ lib/libgenometools.a: obj/gt_config.h $(LIBGENOMETOOLS_OBJ) @echo "[link $(@F)]" @test -d $(@D) || mkdir -p $(@D) -@@ -593,12 +597,13 @@ +@@ -608,12 +612,13 @@ lib/libgenometools$(SHARED_OBJ_NAME_EXT): obj/gt_config.h \ $(LIBGENOMETOOLS_OBJ) \ $(ADDITIONAL_SO_DEPS) \ @@ -36,7 +36,7 @@ lib/libtecla.a: $(LIBTECLA_OBJ) @echo "[link $(@F)]" -@@ -619,51 +624,61 @@ +@@ -634,51 +639,61 @@ $(eval $(call PROGRAM_template, bin/skproto, $(SKPROTO_OBJ) \ lib/libgenometools.a \ _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit