Author: plessy Date: 2013-05-01 06:09:53 +0000 (Wed, 01 May 2013) New Revision: 13466
Added: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules Removed: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules Log: [svn-buildpackage] Tagging r-cran-genabel 1.7-4-1 Deleted: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog =================================================================== --- trunk/packages/R/r-cran-genabel/trunk/debian/changelog 2013-05-01 04:10:07 UTC (rev 13456) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog 2013-05-01 06:09:53 UTC (rev 13466) @@ -1,76 +0,0 @@ -r-cran-genabel (1.7-3-1) UNRELEASED; urgency=low - - * New upstream version - * Replace debian/README.Debian by debian/README.test - * DEP5 copyright - * Standards-Version: 3.9.4 (no changes needed) - * debhelper 9 (control+compat) - - -- Andreas Tille <ti...@debian.org> Sat, 02 Feb 2013 12:32:39 +0100 - -r-cran-genabel (1.7-0-3) testing-proposed-updates; urgency=low - - * Upload to testing-proposed-updates - - -- Andreas Tille <ti...@debian.org> Sat, 02 Feb 2013 07:08:19 +0000 - -r-cran-genabel (1.7-0-2) unstable; urgency=low - - * Fixing the problem which prevents the package from loading while - checking the version on CRAN - Closes: #699260 - - -- Andreas Tille <ti...@debian.org> Wed, 30 Jan 2013 13:11:06 +0100 - -r-cran-genabel (1.7-0-1) unstable; urgency=low - - * New upstream release. - * Depends and Suggests packages according to DESCRIPTION (debian/control). - * Corrected VCS URLs (debian/control). - * Conforms with Policy 3.9.2 (debian/control, no other changes needed). - * Build-Depend on r-cran-mass instead of the whole r-recommended. - - -- Charles Plessy <ple...@debian.org> Fri, 13 Jan 2012 13:56:32 +0900 - -r-cran-genabel (1.6-5-1) unstable; urgency=low - - * New upstream release, buildable with R > 2.12 (closes: #620269). - - [ Andreas Tille ] - * debian/control: - - added myself to uploaders - - changed section to gnu-r - - Depend on ${R:Depends} - * debian/rules: - - fix permissions of files that should not be executable - - Require a number equal or superior than the R version the package - was built with, using a R:Depends substvar - - [ Charles Plessy ] - * debian/control: - - Added myself to uploaders. - - Use debhelper 8 (debian/compat). - - Build-depend on R > 2.10 according to DESCRIPTION. - - Replaces r-other-genabel. - - Added Vcs-Browser and Vcs-Svn fields. - - Updated homepage. - * Install CHANGES.LOG as upstream changelog (debian/rules). - * Converted debian/copyright to DEP-5 format. - - -- Charles Plessy <ple...@debian.org> Fri, 01 Apr 2011 13:46:37 +0900 - -r-cran-genabel (1.6-4-1) unstable; urgency=low - - * New upstream release. - * The package has now arrived in CRAN and is taken from there, - which according to the R policy is also reflected by the name change. - * Switch to source/format 3.0 (quilt) - * Bumped policy-standard to 3.9.1. - - -- Steffen Moeller <moel...@debian.org> Sat, 05 Feb 2011 18:06:24 +0100 - -r-other-genabel (1.4-0-1) unstable; urgency=low - - * Initial release (Closes: #492044). - - -- Steffen Moeller <moel...@debian.org> Wed, 23 Jul 2008 15:43:37 +0200 Copied: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog (from rev 13465, trunk/packages/R/r-cran-genabel/trunk/debian/changelog) =================================================================== --- trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog (rev 0) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/changelog 2013-05-01 06:09:53 UTC (rev 13466) @@ -0,0 +1,88 @@ +r-cran-genabel (1.7-4-1) unstable; urgency=low + + * New upstream version + * Updated qvalue package name (moved from CRAN to Bioconductor). + * Drop references to old name r-other-genabel. + * Drop build-dependance on package only suggested. + * Normalised VCS URLs following Lintian's standard. + * Acquire R:Depends directly from r-base-dev. + * Normalised control file with cme. + + -- Charles Plessy <ple...@debian.org> Wed, 01 May 2013 14:58:43 +0900 + +r-cran-genabel (1.7-3-1) unstable; urgency=low + + * New upstream version + * Replace debian/README.Debian by debian/README.test + * DEP5 copyright + * Standards-Version: 3.9.4 (no changes needed) + * debhelper 9 (control+compat) + + -- Andreas Tille <ti...@debian.org> Sat, 02 Feb 2013 12:32:39 +0100 + +r-cran-genabel (1.7-0-3) testing-proposed-updates; urgency=low + + * Upload to testing-proposed-updates + + -- Andreas Tille <ti...@debian.org> Sat, 02 Feb 2013 07:08:19 +0000 + +r-cran-genabel (1.7-0-2) unstable; urgency=low + + * Fixing the problem which prevents the package from loading while + checking the version on CRAN + Closes: #699260 + + -- Andreas Tille <ti...@debian.org> Wed, 30 Jan 2013 13:11:06 +0100 + +r-cran-genabel (1.7-0-1) unstable; urgency=low + + * New upstream release. + * Depends and Suggests packages according to DESCRIPTION (debian/control). + * Corrected VCS URLs (debian/control). + * Conforms with Policy 3.9.2 (debian/control, no other changes needed). + * Build-Depend on r-cran-mass instead of the whole r-recommended. + + -- Charles Plessy <ple...@debian.org> Fri, 13 Jan 2012 13:56:32 +0900 + +r-cran-genabel (1.6-5-1) unstable; urgency=low + + * New upstream release, buildable with R > 2.12 (closes: #620269). + + [ Andreas Tille ] + * debian/control: + - added myself to uploaders + - changed section to gnu-r + - Depend on ${R:Depends} + * debian/rules: + - fix permissions of files that should not be executable + - Require a number equal or superior than the R version the package + was built with, using a R:Depends substvar + + [ Charles Plessy ] + * debian/control: + - Added myself to uploaders. + - Use debhelper 8 (debian/compat). + - Build-depend on R > 2.10 according to DESCRIPTION. + - Replaces r-other-genabel. + - Added Vcs-Browser and Vcs-Svn fields. + - Updated homepage. + * Install CHANGES.LOG as upstream changelog (debian/rules). + * Converted debian/copyright to DEP-5 format. + + -- Charles Plessy <ple...@debian.org> Fri, 01 Apr 2011 13:46:37 +0900 + +r-cran-genabel (1.6-4-1) unstable; urgency=low + + * New upstream release. + * The package has now arrived in CRAN and is taken from there, + which according to the R policy is also reflected by the name change. + * Switch to source/format 3.0 (quilt) + * Bumped policy-standard to 3.9.1. + + -- Steffen Moeller <moel...@debian.org> Sat, 05 Feb 2011 18:06:24 +0100 + +r-other-genabel (1.4-0-1) unstable; urgency=low + + * Initial release (Closes: #492044). + + -- Steffen Moeller <moel...@debian.org> Wed, 23 Jul 2008 15:43:37 +0200 Deleted: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control =================================================================== --- trunk/packages/R/r-cran-genabel/trunk/debian/control 2013-05-01 04:10:07 UTC (rev 13456) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control 2013-05-01 06:09:53 UTC (rev 13466) @@ -1,33 +0,0 @@ -Source: r-cran-genabel -Section: gnu-r -Priority: optional -Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> -Uploaders: Steffen Moeller <moel...@debian.org>, - Andreas Tille <ti...@debian.org>, - Charles Plessy <ple...@debian.org> -Build-Depends: debhelper (>= 9), cdbs, r-base-dev (>= 2.10), r-cran-mass, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue -Standards-Version: 3.9.4 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-genabel/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/R/r-cran-genabel/trunk/ -Homepage: http://www.genabel.org/ - -Package: r-cran-genabel -Architecture: any -Depends: ${shlibs:Depends}, ${R:Depends}, r-cran-mass -Suggests: r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue -Provides: r-other-genabel -Conflicts: r-other-genabel -Replaces: r-other-genabel -Description: GNU R package for genome-wide SNP association analysis - The package offers the R library GenABEL for the hunt of genetic contributions - to a disease (or any other pheonypical trait) by so called genome-wide - association analysis. Additional input commonly comes from DNA mircoarray - experiments, performed on every individual, that determine differences - (polymorphisms) in the population. GenABEL finds associations between - quantitative or binary traits and single-nucleiotide polymorphisms - (SNPs). - . - When publishing work based to which this package has contributed please - cite: Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn - (2007) "GenABEL: an R library for genome-wide association analysis" - Bioinformatics 2007 23(10):1294-1296. Copied: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control (from rev 13464, trunk/packages/R/r-cran-genabel/trunk/debian/control) =================================================================== --- trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control (rev 0) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/control 2013-05-01 06:09:53 UTC (rev 13466) @@ -0,0 +1,38 @@ +Source: r-cran-genabel +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Steffen Moeller <moel...@debian.org>, + Andreas Tille <ti...@debian.org>, + Charles Plessy <ple...@debian.org> +Section: gnu-r +Priority: optional +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-cran-mass +Standards-Version: 3.9.4 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-genabel/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-genabel/trunk/ +Homepage: http://www.genabel.org/ + +Package: r-cran-genabel +Architecture: any +Depends: ${shlibs:Depends}, + ${R:Depends}, + r-cran-mass +Suggests: r-cran-genetics, + r-cran-haplo.stats, + r-bioc-qvalue +Description: GNU R package for genome-wide SNP association analysis + The package offers the R library GenABEL for the hunt of genetic contributions + to a disease (or any other pheonypical trait) by so called genome-wide + association analysis. Additional input commonly comes from DNA mircoarray + experiments, performed on every individual, that determine differences + (polymorphisms) in the population. GenABEL finds associations between + quantitative or binary traits and single-nucleiotide polymorphisms + (SNPs). + . + When publishing work based to which this package has contributed please + cite: Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn + (2007) "GenABEL: an R library for genome-wide association analysis" + Bioinformatics 2007 23(10):1294-1296. + Deleted: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright =================================================================== --- trunk/packages/R/r-cran-genabel/trunk/debian/copyright 2013-05-01 04:10:07 UTC (rev 13456) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright 2013-05-01 06:09:53 UTC (rev 13466) @@ -1,24 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Source: http://cran.r-project.org/src/contrib/GenABEL_1.7-0.tar.gz - -Files: * -Copyright: GenABEL is copyright 2006-2008 of Yurii Aulchenko, Maksim Struchalin, with - contributions from Stephan Ripke, Terry Therneau and Toby Johnson and - released under version 2 or later of the GNU General Public License (GPL). -License: GPL-2+ - This program is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License along - with this program; if not, write to the Free Software Foundation, Inc., - 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. -Comment: On a Debian GNU/Linux system, the GPL license version 2 is included - in the file /usr/share/common-licenses/GPL-2. - Copied: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright (from rev 13457, trunk/packages/R/r-cran-genabel/trunk/debian/copyright) =================================================================== --- trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright (rev 0) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/copyright 2013-05-01 06:09:53 UTC (rev 13466) @@ -0,0 +1,24 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://cran.r-project.org/src/contrib/GenABEL_1.7-4.tar.gz + +Files: * +Copyright: GenABEL is copyright 2006-2008 of Yurii Aulchenko, Maksim Struchalin, with + contributions from Stephan Ripke, Terry Therneau and Toby Johnson and + released under version 2 or later of the GNU General Public License (GPL). +License: GPL-2+ + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. +Comment: On a Debian GNU/Linux system, the GPL license version 2 is included + in the file /usr/share/common-licenses/GPL-2. + Deleted: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules =================================================================== --- trunk/packages/R/r-cran-genabel/trunk/debian/rules 2013-05-01 04:10:07 UTC (rev 13456) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules 2013-05-01 06:09:53 UTC (rev 13466) @@ -1,15 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- -# debian/rules file for the Debian/GNU Linux r-cran-genabel package -# Copyright 2008-2011 by Steffen Moeller <moel...@debian.org> -# 2011 by Andreas Tille <ti...@debian.org> - -debRreposname=cran -include /usr/share/R/debian/r-cran.mk - -install/$(package):: - ## Require a number equal or superior than the R version the package was built with. - echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars - find debian/$(package)/usr/lib/R/site-library/GenABEL/ -type f -exec chmod 644 \{\} \; - -DEB_INSTALL_CHANGELOGS_ALL = CHANGES.LOG Copied: trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules (from rev 13463, trunk/packages/R/r-cran-genabel/trunk/debian/rules) =================================================================== --- trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules (rev 0) +++ trunk/packages/R/r-cran-genabel/tags/1.7-4-1/debian/rules 2013-05-01 06:09:53 UTC (rev 13466) @@ -0,0 +1,9 @@ +#!/usr/bin/make -f + +debRreposname=cran +include /usr/share/R/debian/r-cran.mk + +install/$(package):: + find debian/$(package)/usr/lib/R/site-library/GenABEL/ -type f -exec chmod 644 \{\} \; + +DEB_INSTALL_CHANGELOGS_ALL = CHANGES.LOG _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit