Author: osallou-guest Date: 2013-05-20 07:19:13 +0000 (Mon, 20 May 2013) New Revision: 13670
Added: trunk/packages/circos/trunk/debian/patches/fix_manpage Modified: trunk/packages/circos/trunk/debian/changelog trunk/packages/circos/trunk/debian/patches/configpath_add_etc trunk/packages/circos/trunk/debian/patches/series Log: new upstream release Modified: trunk/packages/circos/trunk/debian/changelog =================================================================== --- trunk/packages/circos/trunk/debian/changelog 2013-05-20 00:18:19 UTC (rev 13669) +++ trunk/packages/circos/trunk/debian/changelog 2013-05-20 07:19:13 UTC (rev 13670) @@ -1,3 +1,9 @@ +circos (0.64-1) unstable; urgency=low + + * New upstream release + + -- Olivier Sallou <osal...@debian.org> Mon, 20 May 2013 09:01:27 +0200 + circos (0.62.1-1) unstable; urgency=low * New upstream release Modified: trunk/packages/circos/trunk/debian/patches/configpath_add_etc =================================================================== --- trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2013-05-20 00:18:19 UTC (rev 13669) +++ trunk/packages/circos/trunk/debian/patches/configpath_add_etc 2013-05-20 07:19:13 UTC (rev 13670) @@ -4,25 +4,14 @@ Forwarded: not-needed --- a/lib/Circos/Configuration.pm +++ b/lib/Circos/Configuration.pm -@@ -591,6 +591,7 @@ +@@ -693,6 +693,7 @@ } - + my @configpath = ( + "/etc/circos", dirname($file), dirname($file)."/etc", "$FindBin::RealBin/etc", ---- a/lib/Circos/Utils.pm -+++ b/lib/Circos/Utils.pm -@@ -430,7 +430,7 @@ - } - - # look for the file in various directories -- my @dir_1 = (getcwd,$FindBin::RealBin); -+ my @dir_1 = (getcwd,$FindBin::RealBin,"/usr/share/circos"); - my @dir_2 = qw(. .. ../.. ../../..); - my @dir_3 = qw(. etc data); - --- a/etc/makehuesteps +++ b/etc/makehuesteps @@ -1,4 +1,4 @@ @@ -31,3 +20,14 @@ use strict; use Math::Round qw(round); +--- a/lib/Circos/Utils.pm ++++ b/lib/Circos/Utils.pm +@@ -441,7 +441,7 @@ + + # look for the file in various directories + # v0.63 added configuration directory to dir_1 +- my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin); ++ my @dir_1 = grep($_,getcwd,Circos::Configuration::fetch_conf("configdir"),$FindBin::RealBin,"/usr/share/circos"); + my @dir_2 = qw(. .. ../.. ../../..); + my @dir_3 = qw(. etc data); + Added: trunk/packages/circos/trunk/debian/patches/fix_manpage =================================================================== --- trunk/packages/circos/trunk/debian/patches/fix_manpage (rev 0) +++ trunk/packages/circos/trunk/debian/patches/fix_manpage 2013-05-20 07:19:13 UTC (rev 13670) @@ -0,0 +1,25 @@ +Subject: fix errors from pod2man result +Description: Perl file used as source for man page contains errors. +Author: Olivier Sallou <osal...@debian.org> +Last-Updated: 2013-05-20 +Forwarded: No +--- a/lib/Circos.pm ++++ b/lib/Circos.pm +@@ -7,7 +7,7 @@ + + =head1 NAME + +-Circos - Circular data visualizations for comparison of genomes, among other things ++Circos \- Circular data visualizations for comparison of genomes, among other things + + =head1 SYNOPSIS + +@@ -6736,7 +6736,7 @@ + + =over + +-item * Hive plots ++=item * Hive plots + + L<http://www.hiveplot.com> + Modified: trunk/packages/circos/trunk/debian/patches/series =================================================================== --- trunk/packages/circos/trunk/debian/patches/series 2013-05-20 00:18:19 UTC (rev 13669) +++ trunk/packages/circos/trunk/debian/patches/series 2013-05-20 07:19:13 UTC (rev 13670) @@ -2,3 +2,4 @@ debianpackaging configpath_add_etc fix_examples +fix_manpage _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit