Author: alteholz Date: 2013-05-26 16:51:09 +0000 (Sun, 26 May 2013) New Revision: 13712
Added: trunk/packages/python-cogent/trunk/debian/python-cogent-doc.doc-base trunk/packages/python-cogent/trunk/debian/python-cogent-doc.install Modified: trunk/packages/python-cogent/trunk/debian/changelog trunk/packages/python-cogent/trunk/debian/compat trunk/packages/python-cogent/trunk/debian/control trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch trunk/packages/python-cogent/trunk/debian/rules Log: new upstream version Modified: trunk/packages/python-cogent/trunk/debian/changelog =================================================================== --- trunk/packages/python-cogent/trunk/debian/changelog 2013-05-25 08:19:49 UTC (rev 13711) +++ trunk/packages/python-cogent/trunk/debian/changelog 2013-05-26 16:51:09 UTC (rev 13712) @@ -1,11 +1,17 @@ -python-cogent (1.5.3-1) precise; urgency=low +python-cogent (1.5.3-1) unstable; urgency=low * New upstream + * debian/control: use dh 9 + * debian/control: set standard to 3.9.4 (no changes) + * debian/rules: add get-orig-source target + * debian/rules: remove some superfluous files + + [ Tim Booth ] * Added back python2 helper and invoked dh_numpy to sort deps * Split out docs into separate package * Added extra cleanup to dh_clean - -- Tim Booth <tbo...@ceh.ac.uk> Tue, 13 Nov 2012 15:26:47 +0000 + -- Thorsten Alteholz <deb...@alteholz.de> Sun, 16 May 2013 18:00:00 +0200 python-cogent (1.5.1-3) UNRELEASED; urgency=low Modified: trunk/packages/python-cogent/trunk/debian/compat =================================================================== --- trunk/packages/python-cogent/trunk/debian/compat 2013-05-25 08:19:49 UTC (rev 13711) +++ trunk/packages/python-cogent/trunk/debian/compat 2013-05-26 16:51:09 UTC (rev 13712) @@ -1 +1 @@ -8 +9 Modified: trunk/packages/python-cogent/trunk/debian/control =================================================================== --- trunk/packages/python-cogent/trunk/debian/control 2013-05-25 08:19:49 UTC (rev 13711) +++ trunk/packages/python-cogent/trunk/debian/control 2013-05-26 16:51:09 UTC (rev 13712) @@ -3,10 +3,11 @@ Priority: extra Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Steffen Moeller <moel...@debian.org>, - Andreas Tille <ti...@debian.org> -Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), python-support, python-numpy (>= 1.3.0), + Andreas Tille <ti...@debian.org>, + Thorsten Alteholz <deb...@alteholz.de> +Build-Depends: debhelper (>= 9), python-all-dev (>= 2.6), python-support, python-numpy (>= 1.3.0), python-sphinx, cython -Standards-Version: 3.9.3 +Standards-Version: 3.9.4 Homepage: http://pycogent.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-cogent/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-cogent/trunk/ @@ -32,6 +33,12 @@ Section: debug Depends: python-cogent (= ${binary:Version}), ${misc:Depends} Description: debug information for pycogent + PyCogent is a software library for genomic biology. + . + It is distinguished by many unique built-in capabilities (such as true codon + alignment) and the frequent addition of entirely new methods for the analysis + of genomic data. + . This package is needed to improve significantly the bug reports that users may feel inclined to send. @@ -41,4 +48,10 @@ Depends: ${misc:Depends}, libjs-jquery, libjs-underscore Suggests: python-cogent (= ${binary:Version}) Description: docs for python-cogent - Documentation and examples for python-cogent + PyCogent is a software library for genomic biology. + . + It is distinguished by many unique built-in capabilities (such as true codon + alignment) and the frequent addition of entirely new methods for the analysis + of genomic data. + . + This package contains documentation and examples. Modified: trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch =================================================================== --- trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch 2013-05-25 08:19:49 UTC (rev 13711) +++ trunk/packages/python-cogent/trunk/debian/patches/fix_python_shebang_line.patch 2013-05-26 16:51:09 UTC (rev 13712) @@ -1,3 +1,5 @@ +Author: Steffen Moeller <moel...@debian.org> +Description: fix path to python interpreter Index: PyCogent-1.5.1/cogent/align/dp_calculation.py =================================================================== --- PyCogent-1.5.1.orig/cogent/align/dp_calculation.py 2011-06-06 18:10:17.000000000 +0200 Added: trunk/packages/python-cogent/trunk/debian/python-cogent-doc.doc-base =================================================================== --- trunk/packages/python-cogent/trunk/debian/python-cogent-doc.doc-base (rev 0) +++ trunk/packages/python-cogent/trunk/debian/python-cogent-doc.doc-base 2013-05-26 16:51:09 UTC (rev 13712) @@ -0,0 +1,28 @@ +Document: python-cogent-doc +Title: PyCogent documentation +Author: PyCogent Team +Abstract: PyCogent is a software library for genomic biology. + It is a fully integrated and thoroughly tested framework for: + * controlling third-party applications; + * devising workflows; + * querying databases; + * conducting novel probabilistic analyses of biological sequence + evolution; + * and generating publication quality graphics. + It is distinguished by many unique built-in capabilities (such as + true codon alignment) and the frequent addition of entirely new + methods for the analysis of genomic data. + . + Our primary goal is to provide a collection of rigourously validated + tools for the manipulation and analysis of genome biology data sets. + The project is routinely employed in numerous labs across the world + and has provided essential capabilities for many high profile + publications, e.g. Nature 2009 457:480-4, PNAS 2008 105:17994-9, + Science 2008 320:1647-51, Nature 2008 453: 175-83 and + Nat Genet 2007 39: 1261-5. +Section: Science/Biology + +Format: HTML +Index: /usr/share/doc/python-cogent-doc/html/index.html +Files: /usr/share/doc/python-cogent-doc/html/*.html + Added: trunk/packages/python-cogent/trunk/debian/python-cogent-doc.install =================================================================== --- trunk/packages/python-cogent/trunk/debian/python-cogent-doc.install (rev 0) +++ trunk/packages/python-cogent/trunk/debian/python-cogent-doc.install 2013-05-26 16:51:09 UTC (rev 13712) @@ -0,0 +1 @@ +doc/_build/* usr/share/doc/python-cogent-doc/ Modified: trunk/packages/python-cogent/trunk/debian/rules =================================================================== --- trunk/packages/python-cogent/trunk/debian/rules 2013-05-25 08:19:49 UTC (rev 13711) +++ trunk/packages/python-cogent/trunk/debian/rules 2013-05-26 16:51:09 UTC (rev 13712) @@ -21,6 +21,12 @@ override_dh_auto_build: dh_auto_build cd doc; $(MAKE) html + # remove superfluous files and dirs + rm doc/_build/doctrees/COGENT_LICENSE.doctree + rm doc/_build/html/_sources/COGENT_LICENSE.txt + rm doc/_build/html/_static/jquery.js + rm doc/_build/html/_static/underscore.js + rmdir doc/_build/html/_images/math/ override_dh_shlibdeps: dh_shlibdeps @@ -35,3 +41,8 @@ override_dh_strip: dh_strip --dbg-package=python-cogent-dbg + +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs + _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit