This is an automated email from the git hooks/post-receive script.
tdido-guest pushed a change to branch master
in repository python-csb.
from 57b16f8 Somehow the changelog entry of initial version said
unreleased which is obviosly not true (no interest to fiddle forth and back
with tagging old version)
new de1f8cb Imported Upstream version 1.2.1+dfsg
new 40d5692 Merge tag 'upstream/1.2.1+dfsg'
new e4347d2 * Modified debian/changelog to reflect update to latest
upstream version
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
PKG-INFO | 2 +-
csb/__init__.py | 2 +-
csb/apps/__init__.py | 10 +-
csb/apps/buildhmm.py | 63 +-
csb/apps/csfrag.py | 542 ++++++++
csb/apps/hhfrag.py | 302 ++++-
csb/apps/hhsearch.py | 5 +-
csb/apps/precision.py | 30 +-
csb/bio/fragments/__init__.py | 207 ++-
csb/bio/fragments/rosetta.py | 4 +-
csb/bio/io/clans.py | 5 +-
csb/bio/io/cs.py | 206 +++
csb/bio/io/fasta.py | 16 +-
csb/bio/io/hhpred.py | 2 +-
csb/bio/io/noe.py | 269 ++++
csb/bio/io/wwpdb.py | 1096 +++++++++++----
csb/bio/nmr/__init__.py | 1105 ++++++++++++++-
csb/bio/nmr/resources/AtomConnectivity.xml | 812 +++++++++++
csb/bio/sequence/__init__.py | 21 +-
csb/bio/sequence/alignment.py | 617 +++++++++
csb/bio/structure/__init__.py | 52 +-
csb/build.py | 28 +-
csb/io/__init__.py | 5 +
csb/io/tsv.py | 38 +-
csb/numeric/__init__.py | 16 +-
csb/numeric/integrators.py | 10 +-
csb/statistics/__init__.py | 4 +-
csb/statistics/samplers/__init__.py | 12 +-
csb/statistics/samplers/mc/__init__.py | 838 +-----------
csb/statistics/samplers/mc/multichain.py | 1502 +++++++++++++++++++--
csb/statistics/samplers/mc/neqsteppropagator.py | 1239 +++++++++++++++++
csb/statistics/samplers/mc/propagators.py | 55 +-
csb/statistics/samplers/mc/singlechain.py | 311 ++++-
csb/test/__init__.py | 2 +-
csb/test/cases/bio/fragments/__init__.py | 11 +-
csb/test/cases/bio/hmm/__init__.py | 11 +-
csb/test/cases/bio/io/clans/__init__.py | 24 +-
csb/test/cases/bio/io/cs/__init__.py | 87 ++
csb/test/cases/bio/io/fasta/__init__.py | 4 +-
csb/test/cases/bio/io/noe/__init__.py | 148 ++
csb/test/cases/bio/io/wwpdb/__init__.py | 194 ++-
csb/test/cases/bio/nmr/__init__.py | 348 ++++-
csb/test/cases/bio/sequence/alignment/__init__.py | 196 +++
csb/test/cases/bio/structure/__init__.py | 29 +-
csb/test/cases/core/__init__.py | 22 +-
csb/test/cases/io/__init__.py | 87 +-
csb/test/cases/numeric/__init__.py | 59 +-
csb/test/cases/statistics/samplers/__init__.py | 728 +++++++++-
csb/test/data/1d3z.regular.pdb | 342 ++---
csb/test/data/2l01.v2.str | 31 +
csb/test/data/2l01.v3.str | 45 +
csb/test/data/Sparky.peaks | 5 +
csb/test/data/Xeasy1.peaks | 9 +
csb/test/data/Xeasy2.peaks | 8 +
csb/test/data/csb.tsv | 2 +-
csb/test/data/mapping.pdb | 12 +
csb/test/data/mapping2.pdb | 10 +
csb/test/data/mapping3.pdb | 9 +
csb/test/data/modified.pdb | 16 +
csb/test/data/modified2.pdb | 16 +
csb/test/data/out.clans | 14 +-
debian/changelog | 6 +
debian/control | 4 +-
63 files changed, 10232 insertions(+), 1673 deletions(-)
create mode 100644 csb/apps/csfrag.py
create mode 100644 csb/bio/io/cs.py
create mode 100644 csb/bio/io/noe.py
create mode 100644 csb/bio/nmr/resources/AtomConnectivity.xml
create mode 100644 csb/bio/sequence/alignment.py
create mode 100644 csb/statistics/samplers/mc/neqsteppropagator.py
create mode 100644 csb/test/cases/bio/io/cs/__init__.py
create mode 100644 csb/test/cases/bio/io/noe/__init__.py
create mode 100644 csb/test/cases/bio/sequence/alignment/__init__.py
create mode 100644 csb/test/data/2l01.v2.str
create mode 100644 csb/test/data/2l01.v3.str
create mode 100644 csb/test/data/Sparky.peaks
create mode 100644 csb/test/data/Xeasy1.peaks
create mode 100644 csb/test/data/Xeasy2.peaks
create mode 100644 csb/test/data/mapping.pdb
create mode 100644 csb/test/data/mapping2.pdb
create mode 100644 csb/test/data/mapping3.pdb
create mode 100644 csb/test/data/modified.pdb
create mode 100644 csb/test/data/modified2.pdb
--
Alioth's /git/debian-med/git-commit-notice on
/srv/git.debian.org/git/debian-med/python-csb.git
_______________________________________________
debian-med-commit mailing list
debian-med-commit@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
