This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository samtools.
commit b140662dec40bf0f87ce34edf147fbf4cbc9f23d Author: John Marshall <[email protected]> Date: Mon Nov 25 13:28:14 2013 +0000 Use floor(x+0.5) instead of C99's round() --- bam2bcf.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bam2bcf.c b/bam2bcf.c index 4b1ed29..5201233 100644 --- a/bam2bcf.c +++ b/bam2bcf.c @@ -417,7 +417,7 @@ void calc_SegBias(const bcf_callret1_t *bcr, bcf_call_t *call) if ( !nr ) return; int avg_dp = (call->anno[0] + call->anno[1] + nr) / call->n; // average depth - double M = round((double)nr / avg_dp); // an approximate number of variants samples in the population + double M = floor((double)nr / avg_dp + 0.5); // an approximate number of variants samples in the population if ( M>call->n ) M = call->n; // clamp M at the number of samples else if ( M==0 ) M = 1; double f = M / 2. / call->n; // allele frequency -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/samtools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
