This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository htslib.
commit d49f20eafc4eeaa945f41fb5a33677971e8d6713 Author: Petr Danecek <[email protected]> Date: Wed Dec 4 16:47:01 2013 +0000 faidx: Detect compressed BGZF fasta files and create .gzi index without asking to allow proper functioning of samtools faidx fasta.fa.gz --- faidx.c | 2 ++ 1 file changed, 2 insertions(+) diff --git a/faidx.c b/faidx.c index 5be4f23..eda8a74 100644 --- a/faidx.c +++ b/faidx.c @@ -185,7 +185,9 @@ int fai_build(const char *fn) free(str); return -1; } + if ( bgzf->is_compressed ) bgzf_index_build_init(bgzf); fai = fai_build_core(bgzf); + if ( bgzf->is_compressed ) bgzf_index_dump(bgzf, fn, ".gzi"); bgzf_close(bgzf); fp = fopen(str, "wb"); if ( !fp ) { -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/htslib.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
